Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01501 ATGCTTGAACGGAACAGAAGCAAAATGAATCACTGTGTTCCAGATTTCGAAATCCAAATGGACGATGACGAAGAATTCCCAATTCCCGTCTCAAAGAAACCCTCAATGCAAAACGACGAGATCATGGAACTGTTGTGGCAAAACGGCCAGGTTGTGATGCAGAGCCAAAACCATCGACCACTCAGAAAACCGCCGCATACGTTGGTTGCCGGCGGAGTCTCTCCGGCTAGGGAGATTCGATCCTCTGAAGCAGAGAACTACGGTAACCAACACTTGTTCATGCAAGAAGACGAAATGGCTTCGTGGCTTCACTATCCAATCCACGAAGATCCTCCTCCCTTTGATCACCACGATTTCAGCGCCGACATGCTGAACCCGCCGACAAACGTAATCGGGAGCGTGACTCACAATAGCGCCGCCATACAATCCTCCGTTCGCACGACGGAGCTTCGACATCCTGCTCCTCGTCCGCCGATTCCTCCTTCTCGGCGGCCGGTGCAGGCGGCAAACAGGATGCAGAATTTCTCACACTTCTCGAATCACGGCAATGCGTCGTCCAGTTCGAAGGCCACGGCGGCGCAACCGACGGTGGTGGATTCGTGCGAGACGCCGGTGCAGACGGCGGAGCACGCTGAAACCGGTCGCGCGAGCGTGACTGTCGCCGATGCAGGTAAGGCGGCGGAGTCTGGAGGAAGGGAGACGGCGACGTGCGATGTGACGGTGACGTCGTCTCCTGGTGGTTCAAGCGGGAGCGCGGAACCAGTTCAGAGGGAACTTGACCGAAAGAGGAAGGGGAGAGAAGTGGAGGAATCAGAGTTTCAGAGCGAGGATGTCGATTTTGAATCTCCGGAAGCTAAAAAACAAGGTCGTGGTTCTACATCTACTAAGAGATCCCGTGCTGCAGAAGTCCACAATCTCTCAGAGAGGAGGCGTCGAGATAGAATTAATGAAAAAATGAAAGCTTTGCAAGAACTTATACCTCGATGTAACAAGTCTGACAAAGCTTCAATGTTGGATGAAGCAATTGAATATTTGAAGTCACTGCAATTACAAGTGCAGATGATGTCCATGGGATGCGGCATGGTACCCATGATGTTTCCTGGAATCCAGCAGTATTTGCCGCCAATGGGAATGGGAATTGGCATGGGTATGGGCATGGAAATGGGAATGAACAGACCGGTAATGCCATTTCCCAATATGTTAACTAGTTCAACTTTGCCAGCAGCAACTGCAGCTGCTCATTTGGGACCGAGGTTTCCCCCTGTGCCTCCTTTCCATATTCCCCATGTTCCTGCCCCTGATTCATCCAGAATGCCAGCACCAAATCTGTCAGATAATAGTATGCTTAACGCACTTGGTACGCAAGGTCCAGATCAATCACGTATCCCAAACTACACTGATCCTTATCAGCAATACGTCGGCCTCCAACAGGTGCAGTTACAATTAATGCAGGCAATGAACCAACCAAATGTGAGCAAGCCTACTACCAGTAGGGGTCAAGAGAATCCAGAAAAACATCAGTCAGGTAAATTGTCATTCTAG 1542 0.5071 MLERNRSKMNHCVPDFEIQMDDDEEFPIPVSKKPSMQNDEIMELLWQNGQVVMQSQNHRPLRKPPHTLVAGGVSPAREIRSSEAENYGNQHLFMQEDEMASWLHYPIHEDPPPFDHHDFSADMLNPPTNVIGSVTHNSAAIQSSVRTTELRHPAPRPPIPPSRRPVQAANRMQNFSHFSNHGNASSSSKATAAQPTVVDSCETPVQTAEHAETGRASVTVADAGKAAESGGRETATCDVTVTSSPGGSSGSAEPVQRELDRKRKGREVEESEFQSEDVDFESPEAKKQGRGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYLPPMGMGIGMGMGMEMGMNRPVMPFPNMLTSSTLPAATAAAHLGPRFPPVPPFHIPHVPAPDSSRMPAPNLSDNSMLNALGTQGPDQSRIPNYTDPYQQYVGLQQVQLQLMQAMNQPNVSKPTTSRGQENPEKHQSGKLSF 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01501 513 PANTHER TRANSCRIPTION FACTOR PIF3 30 180 IPR044273 GO:0003700|GO:0006355
Vimu3g01501 513 MobiDBLite consensus disorder prediction 146 308 - -
Vimu3g01501 513 Gene3D - 294 357 IPR036638 GO:0046983
Vimu3g01501 513 SMART finulus 305 354 IPR011598 GO:0046983
Vimu3g01501 513 MobiDBLite consensus disorder prediction 485 513 - -
Vimu3g01501 513 MobiDBLite consensus disorder prediction 428 466 - -
Vimu3g01501 513 CDD bHLH_AtPIF_like 299 362 IPR047265 -
Vimu3g01501 513 MobiDBLite consensus disorder prediction 255 271 - -
Vimu3g01501 513 Coils Coil 305 325 - -
Vimu3g01501 513 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 299 348 IPR011598 GO:0046983
Vimu3g01501 513 MobiDBLite consensus disorder prediction 235 251 - -
Vimu3g01501 513 Pfam Helix-loop-helix DNA-binding domain 303 349 IPR011598 GO:0046983
Vimu3g01501 513 MobiDBLite consensus disorder prediction 167 213 - -
Vimu3g01501 513 FunFam Basic helix-loop-helix transcription factor 294 357 - -
Vimu3g01501 513 MobiDBLite consensus disorder prediction 439 466 - -
Vimu3g01501 513 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 302 377 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01501 Vimu-Chr3 28301430 28306067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01501 9 354 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.558 6.90e-62 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu3g01501 HLH 6.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01501 - - gmx:100788491 714.531