Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01483 GCTGCCACTGCCAATCCTGTAGTAGGTTCCCATGTTTGGGTGGAGGATTCTCAAGAAGCCTGGATAGATGGTGTGGTCTTGGAGGTTAAGGGAGGAGAAATCAAAGTCCTTTGCACTTCAGGGAAGACGGTTGTTGTTAAACCTTCTAGTGTTTACCACAAAGATACTGAAGCCCCACCATGTGGAGTGGATGATATGACAAAACTTGCTTATCTACATGAACCTGGTGTCCTGGATAATCTGAGATCAAGATACGATATCAATGAAATTTATACTTACACCGGGAATATATTGATTGCTGTGAATCCTTTCATAAAGCTTCCTCATTTATATGATAGCCATATGATGGCACAATATAAAGGAGCAGGTTTTGGTGAGCTAAGTCCACATCCTTTTGCTGTTGCAGATGCAGCTTATAGACTTATGATTAATGAGGGAATCAGCCAGTCAATATTGGTTAGTGGTGAAAGTGGGGCTGGGAAAACAGAAAGCACCAAGTTACTCATGCGCTATCTTGCTTACATGGGAGGGAGAGCCAATAATGCTGCCGAAGGTAGAACAGTTGAGCAGAAAGTTCTGGAGTCCAATCCTGTTCTAGAAGCCTTTGGCAATGCAAAGACTGTTAGAAACAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAATTTGATAAGAGTGGAAGAATATCTGGGGCTGCTATCAGAACTTATCTGCTGGAAAGATCACGTGTTTGCCAGGTGTCAGATCCAGAGAGGAACTATCACTGTTTCTATATGCTCTGTGCTGCACCTCCAGAGGATATTCAGAAGTTCAAATTAGGAAATCCTAGAGAATTTCATTATCTGAATCAAACAGATTGCTTTGAGTTGGAAGGGGTTGATGAGTCTAAAGAATATCGTGATACTAGGAGGGCAATGGACGTTGTTGGAATAAGTTCTGAGGAGCAGGATGCAATATTTCGAGTGGTTGCTGCAATTTTGCATCTTGGCAACATTGAATTTGCCAAAGGGAAAGAAATGGACTCAAGTGTGCCCAAAGATGAAAAATCTTGGTTCCATCTACATACTGCTGCCGAACTTTTCATGTGTGATGCAAAGGCACTTGAAGATTCTCTTTGTAAGCGTGTAATTGTTACTCGTGATGAAACTATAACAAAATGGCTAGATCCAGAATCTGCTGCACTCAGCCGTGATGCTTTGGCTAAGATTGTGTACACGAGGTTGTTTGATTGGCTGGTAGATAAAATTAATAATTCTATTGGACAAGACCCTGATTCGACATCCTTAATTGGCGTGCTGGATATTTATGGTTTTGAGAGTTTCAAGACTAACAGTTTTGAGCAATTTTGCATCAATTTGACCAATGAAAAACTCCAGCAACATTTTAATCAGCATGTTTTCAAAATGGAGCAAGAAGAATACAAAAAAGAGGAGATTGATTGGAGTTACATTGAGTTTGTTGATAATCAAGATATTCTAGATCTCATTGAAAAGAAACCTGGAGGCATTATTGCTCTTCTTGATGAGGCTTGTATGTTTCCTAGATCAACACATGAAACTTTTGCCCAAAAGCTGTATCAGACATTCAAAAATCATAAAAGGTTCAGCAAGCCCAAATTGTCACGTAGTGACTTCACAATTTGCCATTATGCGGGTGATGTCACCTATCAAACTGAATTGTTCCTGGACAAGAACAAAGATTACGTTGTTGCAGAGCACCAGGCACTTCTTTATGCGTCAAAATGCCCCTTTGTGTCTGGGTTGTTCCCCCCTTCACCTGAGGAATCGTCCAAACAATCAAAGTTTTCTTCAATAGGTTCCCGGTTTAAGCAACAATTGCAAGCCCTACTTGAAACTCTCAGTGCCACTGAGCCACACTACATTCGATGTGTTAAACCCAATAATCTTCTTAAGCCAGCAATATTTGAGAATAAAAATGTTTTGCAGCAATTGCGATGTGGGGGAGTTATGGAGGCAATTAGGATAAGTTGTGCTGGTTATCCGACTAGGAAAACATTTGATGAATTTGCAGATCGATTCGGACTTCTTGCACCTGAAGCTATAGACGGGAGTTCTGATGAGGTCACTGCTTGCAAGAGGATTCTGGAGAAGGTTGGACTTAAGGGCTATCAGATTGGTAAAACCAAAGTGTTTCTTCGAGCTGGTCAAATGGCAGATCTAGATACTCGTAGAAGTGAGGTCTTAGGAAAGTCAGCTAGCATTATTCAGAGAAAAGTTCGCACCTTTTTGGCCAGCCGAAGTTTTGTCTCAATACGCTTGTCTGCTATAAAGATTCAAGCTGCATGTAGAGGACAACTTGCTCGGCAAGTTTATGAAGGACTGCGACGGGAGGCTTCTAGTCTGATGATTCAGAGATTTTTCCGCATGCATGTTGCCAAAAAGGCGTATAAAGAATTGTATAGCTCGGCTGTTTCCCTTCAGACTGGTATGCGAGGGATGGCTGCTCGTAGTGAGCTGCGCTTTAGGAAGCAAACCAAGGCTGCTATTGTCATTCAGAGCCACTGCAGGAAATACCTAGCACTCAGTCGTTTTACGAACTTAAAGAAGGCAGCAATTGCAACACAATGTGCATGGAGAGGAAAAGTTGCTCGACAAGAATTAAGGAAGCTTAAGATGGCTGCAAGAGAAACTGGAGCTCTACAAGCTGCCAAAAATAAGCTTGAAAAGCAAGTTGAAGATCTCACATTGAGGTTGCAGCTAGAGAAACGCTTGAGGGTTGACATTGAAGAATCAAAAACACAAGAAAATGAAAAACTACAATCTGCTTTGCAAGAGATGCAACTTCAGTTCAAAGAAACAAAGTTATTACTTCAAAAGGAACGAGAGGCTGCAAAAAGAGAAGCTGAGAGAGCACCTGTCATACAGGAGGTTCCTGTTGTTGACCATGCTCTGTTGGAGAAGCTAACTAGTGAAAATGAGAAACTCAAGACCCTGGTGAGTTCGTTGGAAGAGAAAATTGGTGAAACTGAAAAGAGATACGAAGAGGCAAACAAAATTAGTGAAGAGAGGTTGAAGCAGACTTTGGATGCTGAATCAAAAATAATCCAGTTGAAGACAGCTATGCAGAGGCTCGAAGAGAAATTCTCTGACATGGAATCCGAAAACCAGGTTCTACGGCAACAGTCTCTGCTAAATTCTTCATCAAAAACAATGTCAGAACACCTTTCTACCCACATATCTGAGCAGAAATTGGAAAATGGTCACCATGTGGGTGAAGATCATAAAACTTCTGAAGCACAGAGTGTCACACCAGTGAAGAAGTTTGGTACAGAATCTGATGGGAAATTGAGGAGATCCTTCATTGAGCGTCAGCATGAGAATGTTGATGCACTTGTGAACTGTGTTACGAGAAATATTGGTTTCCATCATGGAAAGCCTGTTGCTGCATTTACCATTTATAAATGTCTCCTCCACTGGAAATCATTTGAGGCTGAACGAACAAGTGTATTTGATCGCCTTATCCAGATGATTGGCTCTGCAATTCAGAATCAAGATGACAATGATCTTATGGCCTATTGGCTGTCAAATTTGTCTGCACTATTGTTTTTGCTCCAACAAAGTCTGAAATCTGGTGGTTCTGCTGATGCAACTCCTGTAAAAAAACCACCAAATCCAACGTCCCTCTTTGGGAGAATGACAATGGGTTTTCGCTCATCTCCTTCTTCTGCCAGCCTTCCTACCCCTCCATCGGAGGTTGTACGCAAGGTAGAAGCTAAATATCCTGCTTTGCTTTTCAAGCAACAGCTCACAGCCTATGTGGAGAAAATATATGGTATCCTTAGGGACAACTTGAAGAAAGAATTGGCATCATTGCTTTCTTTATGTATCCAGGCACCAAGAACAGCTAAGGGAGTGTTACGTTCTGGCCGATCCTTTGGTAAAGATTCGCCCATGGGTCATTGGCAGAGCATTATAGAATCACTGAATACTCTCCTCTGTACTCTGAAAGAAAACTTTGTACCCCCAGTCCTTATCCAAAAGATCTTCACTCAAACATTCTCATATATTAATGTTCAACTCTTTAATAGTCTTCTTCTACGTCGTGATTGTTGCACATTTACCAATGGGGAATATGTGAAAGCTGGTTTAGCAGAATTGGAGTTGTGGTGCTGCCAAGCAAAAGAGGAGTATGCGGGTTCATCTTGGGATGAGCTTAAGCACATTAGACAAGCTGTTGGGTTCTTGGTTATTCATCAGAAGTATAGGATTTCCTATGATGAAATCATTAATGATTTATGCCCAATCATGAGTGTCCAGCAGCTGTACAGAATATGTACACTTTATTGGGATGCTAACTACAATACTCGAAGCGTATCTCCAGATGTCCTTTCAAGCATGAGAGTGCTTATGGCTGAGGACTCTAATAATGCTCAGAGTGATTCTTTCTTGTTGGATGACAGTTCCAGCATCCCCTTCTCAGTTGATGATCTCTCTACATCACTGCAAGAGAAGGATTTCTCAGACATGAAATCGGCTGATGAGTTGCTTGAGAATCCCGCCTTCCAATTTTTAAATGAGTAG 4545 0.4141 AATANPVVGSHVWVEDSQEAWIDGVVLEVKGGEIKVLCTSGKTVVVKPSSVYHKDTEAPPCGVDDMTKLAYLHEPGVLDNLRSRYDINEIYTYTGNILIAVNPFIKLPHLYDSHMMAQYKGAGFGELSPHPFAVADAAYRLMINEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRANNAAEGRTVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDIQKFKLGNPREFHYLNQTDCFELEGVDESKEYRDTRRAMDVVGISSEEQDAIFRVVAAILHLGNIEFAKGKEMDSSVPKDEKSWFHLHTAAELFMCDAKALEDSLCKRVIVTRDETITKWLDPESAALSRDALAKIVYTRLFDWLVDKINNSIGQDPDSTSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLSRSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLYASKCPFVSGLFPPSPEESSKQSKFSSIGSRFKQQLQALLETLSATEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKTFDEFADRFGLLAPEAIDGSSDEVTACKRILEKVGLKGYQIGKTKVFLRAGQMADLDTRRSEVLGKSASIIQRKVRTFLASRSFVSIRLSAIKIQAACRGQLARQVYEGLRREASSLMIQRFFRMHVAKKAYKELYSSAVSLQTGMRGMAARSELRFRKQTKAAIVIQSHCRKYLALSRFTNLKKAAIATQCAWRGKVARQELRKLKMAARETGALQAAKNKLEKQVEDLTLRLQLEKRLRVDIEESKTQENEKLQSALQEMQLQFKETKLLLQKEREAAKREAERAPVIQEVPVVDHALLEKLTSENEKLKTLVSSLEEKIGETEKRYEEANKISEERLKQTLDAESKIIQLKTAMQRLEEKFSDMESENQVLRQQSLLNSSSKTMSEHLSTHISEQKLENGHHVGEDHKTSEAQSVTPVKKFGTESDGKLRRSFIERQHENVDALVNCVTRNIGFHHGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIQNQDDNDLMAYWLSNLSALLFLLQQSLKSGGSADATPVKKPPNPTSLFGRMTMGFRSSPSSASLPTPPSEVVRKVEAKYPALLFKQQLTAYVEKIYGILRDNLKKELASLLSLCIQAPRTAKGVLRSGRSFGKDSPMGHWQSIIESLNTLLCTLKENFVPPVLIQKIFTQTFSYINVQLFNSLLLRRDCCTFTNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEIINDLCPIMSVQQLYRICTLYWDANYNTRSVSPDVLSSMRVLMAEDSNNAQSDSFLLDDSSSIPFSVDDLSTSLQEKDFSDMKSADELLENPAFQFLNE 1514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01483 1514 PRINTS Myosin heavy chain signature 483 511 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu3g01483 1514 PRINTS Myosin heavy chain signature 148 173 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu3g01483 1514 PRINTS Myosin heavy chain signature 197 224 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu3g01483 1514 PRINTS Myosin heavy chain signature 91 110 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu3g01483 1514 PRINTS Myosin heavy chain signature 430 458 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu3g01483 1514 Pfam Myosin head (motor domain) 63 721 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu3g01483 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 788 884 IPR027417 -
Vimu3g01483 1514 CDD MyosinXI_CBD 1110 1483 IPR037975 GO:0007015
Vimu3g01483 1514 PANTHER MYOSIN 57 1448 - -
Vimu3g01483 1514 CDD MYSc_Myo11 75 721 IPR036018 -
Vimu3g01483 1514 Gene3D - 735 785 - -
Vimu3g01483 1514 Gene3D - 786 833 - -
Vimu3g01483 1514 Gene3D - 834 883 - -
Vimu3g01483 1514 FunFam unconventional myosin-Va 786 834 - -
Vimu3g01483 1514 ProSiteProfiles IQ motif profile. 855 884 IPR000048 GO:0005515
Vimu3g01483 1514 ProSiteProfiles IQ motif profile. 832 861 IPR000048 GO:0005515
Vimu3g01483 1514 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 7 56 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vimu3g01483 1514 Coils Coil 1015 1049 - -
Vimu3g01483 1514 SMART DIL_2 1335 1442 IPR002710 -
Vimu3g01483 1514 Pfam DIL domain 1336 1439 IPR002710 -
Vimu3g01483 1514 SMART iq_5 831 853 IPR000048 GO:0005515
Vimu3g01483 1514 SMART iq_5 806 828 IPR000048 GO:0005515
Vimu3g01483 1514 SMART iq_5 758 780 IPR000048 GO:0005515
Vimu3g01483 1514 SMART iq_5 854 876 IPR000048 GO:0005515
Vimu3g01483 1514 SMART iq_5 783 805 IPR000048 GO:0005515
Vimu3g01483 1514 SMART iq_5 735 757 IPR000048 GO:0005515
Vimu3g01483 1514 Gene3D - 668 731 - -
Vimu3g01483 1514 Gene3D - 440 624 - -
Vimu3g01483 1514 Pfam IQ calmodulin-binding motif 762 779 IPR000048 GO:0005515
Vimu3g01483 1514 Pfam IQ calmodulin-binding motif 787 805 IPR000048 GO:0005515
Vimu3g01483 1514 Pfam IQ calmodulin-binding motif 857 876 IPR000048 GO:0005515
Vimu3g01483 1514 Pfam IQ calmodulin-binding motif 833 852 IPR000048 GO:0005515
Vimu3g01483 1514 Gene3D Myosin VI head, motor domain, U50 subdomain 313 602 - -
Vimu3g01483 1514 FunFam unconventional myosin-Va 835 882 - -
Vimu3g01483 1514 FunFam Myosin heavy chain 253 308 - -
Vimu3g01483 1514 FunFam Class V myosin 440 582 - -
Vimu3g01483 1514 Coils Coil 973 1007 - -
Vimu3g01483 1514 ProSiteProfiles IQ motif profile. 759 788 IPR000048 GO:0005515
Vimu3g01483 1514 Coils Coil 878 951 - -
Vimu3g01483 1514 SMART MYSc_2a 56 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu3g01483 1514 Gene3D Kinesin motor domain 64 663 IPR036961 -
Vimu3g01483 1514 ProSiteProfiles Dilute domain profile. 1159 1460 IPR002710 -
Vimu3g01483 1514 FunFam Myosin XI D 736 785 - -
Vimu3g01483 1514 ProSiteProfiles IQ motif profile. 784 813 IPR000048 GO:0005515
Vimu3g01483 1514 ProSiteProfiles IQ motif profile. 807 836 IPR000048 GO:0005515
Vimu3g01483 1514 Pfam Myosin N-terminal SH3-like domain 9 51 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vimu3g01483 1514 FunFam Myosin 2 313 425 - -
Vimu3g01483 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 786 IPR027417 -
Vimu3g01483 1514 ProSiteProfiles Myosin motor domain profile. 61 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu3g01483 1514 Gene3D - 253 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01483 Vimu-Chr3 28011107 28042257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01483 2 1513 Myosins gene family AT5G43900 75.610 0.0 2360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01483 K10357 - gmx:100791070 2806.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01483 3 28011107 28042257 Vimu3g01483 3 28011107 28042257 ECH