Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01477 ATGGGTGTCTCACGATATTTCCATGACGTTCTAGGATTGTCCGTGTTGGAACTTACGACAATCTGCGTGAACCTGACTTTTGTTCTTTTGTTTCTCTTTGTTGTCTCGGTGAGGCGTGCTATTGTGTACCAGGGTGGATTGCGATTTGGTAAGAATGGGAACAGCGGCAATGCCAGCCCAATCTGTAGTGTCATTGATGAAGAAACGCGTGGTGTTAGAATCACTTTGGTGTTCAAGTTGTCAGTGGTGTCTTGTTTCTATATTTTGTTTGTGCATGTTTTGGCCTTGGGGTTCGAAGGGTGTGCTTTAGTTTGGGGTGAGGCCGACGTGGATTTGTCTATTCTCTCTGTGCCTGCTGCACAGGGTTTAGCTTGGTTTGTGTGGAGCTTCTCGGTCTTGCATTGCAAGTTCAAGGTGTCAGAGAGGTTTCCAGTTTTGTTGAGAGTTTGGTGGTTTTTGTCCTTTGTTATTTGCTTGTGTACTTTGTATGTTGATGGGAGAGGGTTTTGGGAGGATGGTTCTCAATATCTATGTTCTCGTGCTGTCTCAAATGTTGCTGTCACTCCACCTCTTGCATTTTTGTTTGTGGTTGCAGTCAGGGGTGACACTGGTATAAGAGTTTGTCGGAACTCTGATCTTCAAGAGCCATTGCTTGTTGAGGAGGAACCCGGGTGTCTCAGGGTTACTCCTTATAGAGATGCTGGAATTTTTAGTTTGGTCACTCTTTCTTGGCTGAATCCACTTCTTTCAATTGGTGCTAAGAGACCGCTTGAGCTTAAGGACATTCCACTTGTTGCACCAAGAGACAGAGCCAAGACTTGTTATAAGATTCTGAATTCTAATTGGGAGAGATTGAAGGCTGAAAATGACAATCCCTCTAAGCAGCCTTCTTTGGCTTGGGCGATTCTCAAGTCATTCTGGAAAGAGGCAGCTTTGAATGCTATCTTTGCTGGTTTGAATACTTTGGTGTCATATGTAGGTCCGTACATGATAAGTTACTTTGTGGATTACTTGGGTGGCAAGGAGACCTTCCCCAATGAGGGATATACCCTTGCTGGTATATTTTTTGTGGCGAAGCTTGTGGAGACTGTGACAACTAGGCAGTGGTATCTAGGAGTGGATATCTTGGGCATGCATGTTAGATCAGCCCTAACTGCTATGGTATATAGAAAGGGACTCAGACTCTCAAGCTCTGCCAAGCAAAGTCACACAAGTGGGGAGATTGTCAACTACATGGCTGTTGATGTTCAGAGGGTCGGGGACTTCTCTTGGTACCTTCATGATATGTGGATGCTTCCTCTGCAGATTGTTCTTGCCCTTTTTATTCTGTATAAGAATGTCGGAATTGCTTCTATCGCAACATTGATTGCCACAATCGTTTCCATTGTTGTCACGGTTCCTGTGGCTAGGATACAAGAAGATTATCAGGACAAATTGATGGCTGCAAAGGATGAAAGGATGAGAAAGACATCAGAGTGTCTTAGGAATATGAGGATTCTCAAGCTCCAAGCTTGGGAGGACAGATACCGATTGAAGTTGGAGGAAATGCGTGGAGTAGAGTACAAGTGGCTAAGGAAAGCACTTTACTCTCAGGCTTTCATAACTTTCGTATTCTGGAGCTCCCCTATATTTGTTTCAGCTGTCACTTTTGCTACTTGCATATTGTTGGGGGGCCAGTTGACTGCAGGTGGCGTTCTCTCTGCTCTAGCTACTTTCAGAATTCTCCAAGAACCTCTGAGGAATTTTCCTGACTTGGTGTCAACCATGGCTCAGACCAAAGTTTCTATTGATCGCATATCTACTTTCCTTCAGGATGAAGAATTGCAGGAAGATGCGACTATCATCATGCCGCGTGGCCTTTCTAACTTGGCCGTAGAAATCAGGGATGGTGTCTTCTGCTGGGACTCTTCTTTGCCTAGGCCTACTCTATCAGAAATACGTATGAAAGTGGAAAAGGGGATGAGCGTGGCTGTTTGTGGCATGGTCGGTTCTGGGAAGTCAAGTTTTCTTTCTTGCATTCTTGGAGAGATTCCCAAGCTGTCTGGTGAAGTAAAAGTGTGTGGTTCTGTTGCATACGTCCCCCAATCTGCTTGGATTCAATCAGGAAATATAGAAGAAAATATCCTGTTTGGCTCCCCAATGGATAAAGCAAAGTACAAGAATGTTCTTCATGCTTGTTCACTGAAAAAGGATCTAGAGCTTTTCTCACATGGAGACCAGACAATCATTGGTGACAGAGGTATAAATTTGAGCGGTGGCCAGAAGCAGCGCGTTCAGCTTGCACGAGCACTCTACCAAGATGCTGATATTTACCTCCTTGATGATCCCTTCAGTGCAGTTGATGCCCACACTGGATCGGAATTATTTAGGGAGTATGTATTGACAGCACTAGCAAATAAGACAGTTATTTTTGTGACTCATCAAGTTGAATTTCTCCCTTCTGCTGATATGATACTGGTTCTTAAAGAAGGTCATATCATACAGGCAGGAAAATATGATGATCTTTTACAAGCAGGAACAGACTTCAAAACTCTAGTTTCGGCTCACCATGAAGCAATAGAGGCCATGGATATTCCTAATCACTCAGTCGATTCAGATGAAAATGTACCTTTGGAGGAATCTATTATGAACAGTAAGACATCCATTTCTTCTGCAAATGATACTGACAGTTTGGCAAAGGAAGTTCAAGAGGGATCATCGGATCAGAAAGTAATTAAGGAGAAGAAGAAAGCAAAACGCTCAAGGAAAAAACAGCTTGTTCAGGAAGAGGAGAGGGTTAGAGGTAGAGTCAGCATGATGGTCTACTGGTCGTACATGGCTGCAGCATATAAAGGTTTATTGATTCCCCTCATAATCATGGCACAAACATTATTTCAGTTCCTCCAGATTGCTAGTAATTGGTGGATGGCTTGGGCAAATCCTCAAACTGACGGAGACCAGCCCAAAGTAACACCTACTGTTCTTCTTCTTGTGTACATGGCCCTCGCTTTTGGGAGCTCATGGTTTATTTTTGTAAGGGCTGTTCTCGTGGCTACATTTGGTCTAGCAGCTGCACAGAAGCTTTTTTTCAACATGCTTAGAAGCATTTTCCATGCACCAATGTCTTTCTTTGACTCTACACCAGCTGGGAGGATCTTGAATCGTGTAAGTTCTATTATTTATCCCCTTCACCTTTTGTTTTTGTTATTGTCTATTTGTGTGTGGTGTGTATCATATAATGGGCTATTTGTATCCACCAGGTTTCAATTGATCAAAGTGTGGTAG 3264 0.4344 MGVSRYFHDVLGLSVLELTTICVNLTFVLLFLFVVSVRRAIVYQGGLRFGKNGNSGNASPICSVIDEETRGVRITLVFKLSVVSCFYILFVHVLALGFEGCALVWGEADVDLSILSVPAAQGLAWFVWSFSVLHCKFKVSERFPVLLRVWWFLSFVICLCTLYVDGRGFWEDGSQYLCSRAVSNVAVTPPLAFLFVVAVRGDTGIRVCRNSDLQEPLLVEEEPGCLRVTPYRDAGIFSLVTLSWLNPLLSIGAKRPLELKDIPLVAPRDRAKTCYKILNSNWERLKAENDNPSKQPSLAWAILKSFWKEAALNAIFAGLNTLVSYVGPYMISYFVDYLGGKETFPNEGYTLAGIFFVAKLVETVTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSSAKQSHTSGEIVNYMAVDVQRVGDFSWYLHDMWMLPLQIVLALFILYKNVGIASIATLIATIVSIVVTVPVARIQEDYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRLKLEEMRGVEYKWLRKALYSQAFITFVFWSSPIFVSAVTFATCILLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSIDRISTFLQDEELQEDATIIMPRGLSNLAVEIRDGVFCWDSSLPRPTLSEIRMKVEKGMSVAVCGMVGSGKSSFLSCILGEIPKLSGEVKVCGSVAYVPQSAWIQSGNIEENILFGSPMDKAKYKNVLHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFREYVLTALANKTVIFVTHQVEFLPSADMILVLKEGHIIQAGKYDDLLQAGTDFKTLVSAHHEAIEAMDIPNHSVDSDENVPLEESIMNSKTSISSANDTDSLAKEVQEGSSDQKVIKEKKKAKRSRKKQLVQEEERVRGRVSMMVYWSYMAAAYKGLLIPLIIMAQTLFQFLQIASNWWMAWANPQTDGDQPKVTPTVLLLVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFFNMLRSIFHAPMSFFDSTPAGRILNRVSSIIYPLHLLFLLLSICVWCVSYNGLFVSTRFQLIKVW 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01477 1087 Gene3D ABC transporter type 1, transmembrane domain 279 608 IPR036640 GO:0005524|GO:0016020
Vimu3g01477 1087 SUPERFAMILY ABC transporter transmembrane region 936 1076 IPR036640 GO:0005524|GO:0016020
Vimu3g01477 1087 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 311 591 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu3g01477 1087 SUPERFAMILY ABC transporter transmembrane region 300 607 IPR036640 GO:0005524|GO:0016020
Vimu3g01477 1087 CDD ABC_6TM_ABCC_D1 312 599 IPR044746 GO:0140359
Vimu3g01477 1087 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 950 1051 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu3g01477 1087 CDD ABCC_MRP_domain1 625 824 - -
Vimu3g01477 1087 ProSitePatterns ABC transporters family signature. 750 764 IPR017871 GO:0005524|GO:0016887
Vimu3g01477 1087 FunFam ABC transporter C family member 5 611 857 - -
Vimu3g01477 1087 Pfam ABC transporter transmembrane region 314 579 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu3g01477 1087 Pfam ABC transporter transmembrane region 951 1052 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu3g01477 1087 Gene3D - 620 853 IPR027417 -
Vimu3g01477 1087 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 625 848 IPR003439 GO:0005524
Vimu3g01477 1087 Gene3D ABC transporter type 1, transmembrane domain 869 1071 IPR036640 GO:0005524|GO:0016020
Vimu3g01477 1087 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 232 1051 - -
Vimu3g01477 1087 FunFam ABC transporter C family member 10 294 607 - -
Vimu3g01477 1087 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 622 847 IPR027417 -
Vimu3g01477 1087 Pfam ABC transporter 643 777 IPR003439 GO:0005524
Vimu3g01477 1087 MobiDBLite consensus disorder prediction 879 893 - -
Vimu3g01477 1087 SMART AAA_5 652 833 IPR003593 GO:0016887
Vimu3g01477 1087 Coils Coil 905 925 - -
Vimu3g01477 1087 MobiDBLite consensus disorder prediction 879 910 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01477 Vimu-Chr3 27788378 27798341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01477 625 853 Calmodulin-binding Proteins AT2G36910 28.112 2.10e-22 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01477 - - gmx:100781010 1893.63