Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01473 ATGGCCGTGGTCTCCTGCATGCTTATTATCTTTCTTTGTTTTCCATTTCTAAAATTTGTATCTGTAGCCACCGCCCAGAAGCACGTATGTGATAACGGCAACGGCAACTACACAGCCAACAGCACCTACAGCAGCAACCTCAACACCCTTTTATCCACTCTCTCTTCCAACACACAAATCAACTACGGTTTCTACAACTTTTCATATGGCCAAAACAGTGACATAGCTAATGCCATAGGGCTGTGTAGAGGAGATGTTGAGTCAGAGAGGTGCCGCAGCTGCCTCAAAAACTCCACACTCGATATACAACACAGATGTCCAAACCAGAAAAAGGCAATTCTATGGTCCGATCTATGCATGTTGCGCTACTCTAACGAAACAATATTCCATAAAATGGAAACTTCTCCTGGTTATTACTGGTGGAACTTAGAAAATGTAACGGAACTGAATCAGTTCAGTCAAGTGCTCGGGAACTTAATGAAGCGTCTAAGAGGGATAGCTGCATCAGGTGACTCCCGTCGTAAGTATGCTGCGGCAGAAAATGCAACTGGTTTAAATTTTCAGACCATATACGGTGCTGTGCAGTGCACCCCTGATTTGTCTCAACAAGAATGTAATCAATGCTTAGAGGGGGCTATCTCAGAGATCCCAAACTGCTGCGATGACAAGGTAGGAGGTAGAGTTCTTAGACCAAGTTGTAATCTTAGATTCGAAACTTACAGATTCTACGGAACTGAAACAACATTAGACCCGGTTCCAGAGGCACCTCCTCCATCCACCAATACCACTTCCTCAAAAGAAAGTGGCAACACAACAATAATTGTCATTGCGGTAGTTGTTCCTACTGTTGTTGTTGTTATTTTGCTCATTTGTCTCTTGCTATATTTAAGGAGGAGGAAGACAAGGAAAAATCTTGCAGGCAAGTCCATTAAAGAAGAACAAGATGATGAGGATGAAATTAACATTGTTGAGTCATTGCATTTCAATTTTGACGCAATACGAGTTGCTACCGAGGACTTCTCTGATTCTAAAAGACTTGGACAAGGTGGATTTGGAGCTGTTTACTGGGGTAGGCTCCCCAATGGACAGATAATTGCAGTGAAAAGGTTGTCAAGAGATTCTGGACAAGGAGATACGGAATTTAAGAATGAAGTGCTTTTAGTGGTGAAGCTTCAGCACCGGAATTTAGTTAGGCTACTTGGTTTCTGTTTGGAAGGAAGAGAAAGATTACTCATCTATGAATTTGTTCCCAATAAAAGCCTTGATTACTTCATCTTTGATCCAGCCATGAAAGCACAGTTGGATTGGGAAAAGCGCTACAAAATCATTAGAGGTATTGCTCGAGGTCTTCTCTACCTTCACGAAGATTCTCAGCTACGAATTATCCATCGAGATCTCAAAGCAAGCAACATTCTCTTAGACGATGAGATGAATCCTAAGATAGCAGATTTTGGCATGGCAAGACTGGTTTTAATGGATCAAACTCAAGTAAACACAAATAGAATTGTTGGAACCTATGGATACATGGCACCGGAGTATGCAATGCAAGGACAGTTTTCAGTGAAATCGGATGTGTACAGTTTTGGTGTACTGATTCTTGAGATTGTAAGCGGCCAGAAAAACAGTGGAATTAATAATGGGGAAAATATGGAGGATCTACTAAGCTTCGCTTGGAGAAACTGGAAGGAGGGGAAGGCTATAAATGTTGTAGATCCATCACTTAATAGCAATTCACGGAATGAAATGATGAGATGCTTGCATATTGGTTTACTATGTGTTCAAGAAAATTTTCTAGACAGACCAACTATGGCTAACATTATACTGATGCTTAATAGTCATTCTTTGAGTCTCCCTATTCCTACAGAACCAGCATTTTATGTGAACGGTAGAACTAGAAGCCTTCCAGAGATGCAGTCATGGGAATATAATTCAAGGGAAACAGGGGAAACAGGATCAAGTAAACCGATACTTAAATCAAGTCAGGAATCAGAAAATGAAGTTTCAATCACTGAGTTATACCCTCGCTAA 2028 0.4107 MAVVSCMLIIFLCFPFLKFVSVATAQKHVCDNGNGNYTANSTYSSNLNTLLSTLSSNTQINYGFYNFSYGQNSDIANAIGLCRGDVESERCRSCLKNSTLDIQHRCPNQKKAILWSDLCMLRYSNETIFHKMETSPGYYWWNLENVTELNQFSQVLGNLMKRLRGIAASGDSRRKYAAAENATGLNFQTIYGAVQCTPDLSQQECNQCLEGAISEIPNCCDDKVGGRVLRPSCNLRFETYRFYGTETTLDPVPEAPPPSTNTTSSKESGNTTIIVIAVVVPTVVVVILLICLLLYLRRRKTRKNLAGKSIKEEQDDEDEINIVESLHFNFDAIRVATEDFSDSKRLGQGGFGAVYWGRLPNGQIIAVKRLSRDSGQGDTEFKNEVLLVVKLQHRNLVRLLGFCLEGRERLLIYEFVPNKSLDYFIFDPAMKAQLDWEKRYKIIRGIARGLLYLHEDSQLRIIHRDLKASNILLDDEMNPKIADFGMARLVLMDQTQVNTNRIVGTYGYMAPEYAMQGQFSVKSDVYSFGVLILEIVSGQKNSGINNGENMEDLLSFAWRNWKEGKAINVVDPSLNSNSRNEMMRCLHIGLLCVQENFLDRPTMANIILMLNSHSLSLPIPTEPAFYVNGRTRSLPEMQSWEYNSRETGETGSSKPILKSSQESENEVSITELYPR 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01473 675 MobiDBLite consensus disorder prediction 638 675 - -
Vimu3g01473 675 FunFam Cysteine-rich receptor-like protein kinase 10 300 415 - -
Vimu3g01473 675 SMART serkin_6 340 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01473 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Vimu3g01473 675 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Vimu3g01473 675 CDD STKc_IRAK 346 611 - -
Vimu3g01473 675 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 30 674 - -
Vimu3g01473 675 ProSiteProfiles Gnk2-homologous domain profile. 134 242 IPR002902 -
Vimu3g01473 675 MobiDBLite consensus disorder prediction 638 668 - -
Vimu3g01473 675 FunFam cysteine-rich receptor-like protein kinase 10 416 617 - -
Vimu3g01473 675 Gene3D Phosphorylase Kinase; domain 1 301 415 - -
Vimu3g01473 675 FunFam Cysteine-rich receptor-like protein kinase 10 136 242 - -
Vimu3g01473 675 SUPERFAMILY Protein kinase-like (PK-like) 325 642 IPR011009 -
Vimu3g01473 675 ProSiteProfiles Gnk2-homologous domain profile. 25 128 IPR002902 -
Vimu3g01473 675 Pfam Salt stress response/antifungal 145 240 IPR002902 -
Vimu3g01473 675 Pfam Salt stress response/antifungal 30 125 IPR002902 -
Vimu3g01473 675 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 23 128 - -
Vimu3g01473 675 ProSiteProfiles Protein kinase domain profile. 340 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01473 675 Gene3D Transferase(Phosphotransferase) domain 1 416 617 - -
Vimu3g01473 675 Gene3D - 135 242 IPR038408 -
Vimu3g01473 675 Gene3D - 22 127 IPR038408 -
Vimu3g01473 675 Pfam Protein tyrosine and serine/threonine kinase 343 608 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01473 Vimu-Chr3 27710808 27713600 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01473 7 675 Receptor kinase-like Gene Family AT4G21410 49.059 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu3g01473 PK_Tyr_Ser-Thr 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01473 - - var:108324785 1023.08