Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01471 ATGTCAACTGTGTCAAAAGATGACAACTTGGTGCTTTCTTCGGAGGACTCTTCTTGCCCAGAAGAGTCTGAGATCGAATTGGGTCTTGGGTTGAGCATCTCAGGCCCTTCTAAGTCTTACCACCATGTCCACGCTCATTCTCCTTCTCCTTATGCTAGGATTTTCACTGCCAGGGCTTTTCCTTCTTCACCATCACCATCACCATCACCTTCCTCTTCTTCCTCTTCCTCTCCCAACATCACTGCTGGCACCAAGAGAGCTGCTGAATCTCTTGTTGCAAATAATCGTCCCAGTCTAAATTCACCCCTTTTAATTTCGCAATTGATGGATCACATGGTGTTACTCAGCCGAAGGAATTTGAAGAATTGGACTGAGTTTGGAAATCAAGTAGTTGGGTGGCCTCCACTTCGGACATATAGAGTGAATAGCTACAATATCCAAGCAAAATCAACAGAAGTATTCAACTCAGTGCCTGAGAAGAGTAAAGGCAACAATACTGTGGTAAGGAAAAGTGCTGACAATGGCAATGGTAACAACATTAATGCCAAAGAAAAAAGACAGGTCAGGAGTTCCCTGTTCGTCAAGGTAAATATGGATGGAATACCTATTGGGAGGAAGGTTGATTTGAGCGCTCATAGTTCCTATGAAACCTTAGCACAAACGTTGGAGGACATGTTTAATGAATCAACCACAGTCACCACTTGCAAAGGAGCAAATGGTGAGGATCATGGAATTATTATTGGAGGAGAAAGGCATTCAAAATTGTTGGATGGATCTTCCAAGTTTGTGCTCACTTACGAAGACAAGGAAGGAGATTGGATGCTTGTTGGGGATGTTCCTTGGGGGATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATAATGAGGACATCTGAGGCTAATGGACTTGCACCAAGATTCGAAGAAAACATCAGACAGAAATGCAAGCCCATATAG 954 0.4371 MSTVSKDDNLVLSSEDSSCPEESEIELGLGLSISGPSKSYHHVHAHSPSPYARIFTARAFPSSPSPSPSPSSSSSSSPNITAGTKRAAESLVANNRPSLNSPLLISQLMDHMVLLSRRNLKNWTEFGNQVVGWPPLRTYRVNSYNIQAKSTEVFNSVPEKSKGNNTVVRKSADNGNGNNINAKEKRQVRSSLFVKVNMDGIPIGRKVDLSAHSSYETLAQTLEDMFNESTTVTTCKGANGEDHGIIIGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFLSSVRRLRIMRTSEANGLAPRFEENIRQKCKPI 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01471 317 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 301 IPR003311 GO:0005634|GO:0006355
Vimu3g01471 317 MobiDBLite consensus disorder prediction 160 180 - -
Vimu3g01471 317 MobiDBLite consensus disorder prediction 69 84 - -
Vimu3g01471 317 Gene3D - 186 307 - -
Vimu3g01471 317 MobiDBLite consensus disorder prediction 58 86 - -
Vimu3g01471 317 ProSiteProfiles PB1 domain profile. 191 298 IPR000270 GO:0005515
Vimu3g01471 317 MobiDBLite consensus disorder prediction 1 18 - -
Vimu3g01471 317 FunFam Auxin-responsive protein 186 306 - -
Vimu3g01471 317 Pfam AUX/IAA family 25 305 IPR033389 -
Vimu3g01471 317 SUPERFAMILY CAD & PB1 domains 187 294 - -
Vimu3g01471 317 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01471 Vimu-Chr3 27668154 27676472 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01471 184 305 B3 DNA Binding Superfamily AT1G59750 34.426 1.87e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vimu3g01471 AUX_IAA 9.1e-63 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01471 K14484 - gmx:100779400 442.58