Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01469 ATGGTTGCGGGTCTGTTCGTTTCCAATTTCCTTGCTTGCGATGCACGAATAGACCCTTCTTCATTCATACAAACAAGAATGGCCGAAGACAAAAAGGGATTGGTAATAGGAATCGACCTTGGCACAACATACTCCTGTGTTGCAGTATGGCATCAACAACATAATAGGGTGGAGATCATTCATAATGATCAAGGTAACAATACTACTCCTTCTTGTGTTGCTTTCACGGACCATGAAAGGTTGATAGGAGATGCTGCTACAAATCAAGCTGCTTTAAATCCAGAGAACACCATCTTCGATGCTAAGAGGTTGATAGGTAGAAAATACAGTGACCCACTTGTTCAGAAAGACAAAATGTTGTGGCCATTTAAGGTTGTTGCCGGTGTCAATGACAAACCCATGATTTCTGTTAAGTACAAAGGCCAGGAGAAGATCCTTATTGCGGAGGAAGTATCATCCATGGTCCTCTCAAAGATGCGGGACATTGCAGAAGCATACTTGGAAAAGCCTGTGAAGAATGCAGTGGTTACTGTGCCTGCTTATTTCAACGATTCTCAGCGCAAAGCCACCATGGATGCTGGTGCTATTATAGGTCTCAATGTTATTCGTATAATCAATGAACCGACAGCTGCAGCAATTGCATACGGTCTTGATAAAAGAAATGATTGTGTTGGACAGCGAAATATTTTTGTTTTTGACTTTGGAGGTGGTACATTTGATGTGTCTATTCTCACTATTGAGAACAAAGTCTTTCAAGTTAAGGCCACTGCCGGAAACACTCACCTTGGCGGAGAGGACATTGATAATAGAATGATGAACTACTTTGTGGAGGAGATGAAAAGGAAACGTAAAGTTGACATAAGTGGGAATCCACGTGCCTTAAGGAGGTTGAAAAGTGCTTGCGAGAGAGCAAAAAGGACACTGTCATATGCTGTTACTACAAACATCGAGATAGATGGTTTATTTCAAGGCATTGATTTGCTTTCTTCAATAACCCGAGCAAAATTTGAAGAAATCAATATGGAGGTCTTTGAAGAGTGTATGGAAACAGTAGATAGGTGTCTTAAGGATGCTAATATGGAGAAAAGTAGTGTGCATGATGTTGTTCTAGTTGGTGGTTCTTCTAGGATTCCCAAAATGCAGCAGCTACTTCAAGACTTTTTCAATGGGAAGGATCTTTGCAAGAGCGTAAACCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTGCAGGCTGCTCTCTTGACTAAAGGCATTGAGAATGTTCCAGATTTGGTATTGAAAGATGTTACTCCGCTTTCACTTGGCGTATCGTTAAAGGGGGATCTCATGAGTGTTGTGATTCCTAGGAACACTACTATTCCTATAAAGAAGGAAAAAGTTATTGTGACAATCGAAGATGACCAATATTCAGTCAGGCTTCCGGTTTGTGAGGGCGAGAGAGTAAAAGCAAGTGATAATAATTTGTTGGGTTCTTTAACTATTTCTGGCTTACCCCCAGCTCCTCGTGGCTATCCTTTTGATGTGACTTTTACAATAAATGAAAATGGCATTCTTTCTGTTTCTGCTGAGGATAAAGTAACCGGTAATAGGAATGAAATTATAATATCCAATGACAAAGGAAGACTATCAGATGCAGAAATTAGTAAAATGATTAAGGAAGCAGAGAATTATAAGTCTGAAGATGAGAAGTTTCTTAAGAAGGCCAAAGCAATGAATGATTTAGATTATCATGTTTATAAGATCAGAAAGGCTTTAAAGAAAGAAGAAATCAGCTCAAAGTTGAGCTGGAAAGAAAAGGAAGATATCATGTCTAAAATTTCTAGAGCCACTGATATGCTTGATAGTCAGAACGAGATGGAAGACATAGTTGCTATTGAAGACTTTCTGAAAGATCTTAAAGTAATCAGTGAACGAATTATTATGGTCATGGAGAAGATTGTCTAG 1944 0.3951 MVAGLFVSNFLACDARIDPSSFIQTRMAEDKKGLVIGIDLGTTYSCVAVWHQQHNRVEIIHNDQGNNTTPSCVAFTDHERLIGDAATNQAALNPENTIFDAKRLIGRKYSDPLVQKDKMLWPFKVVAGVNDKPMISVKYKGQEKILIAEEVSSMVLSKMRDIAEAYLEKPVKNAVVTVPAYFNDSQRKATMDAGAIIGLNVIRIINEPTAAAIAYGLDKRNDCVGQRNIFVFDFGGGTFDVSILTIENKVFQVKATAGNTHLGGEDIDNRMMNYFVEEMKRKRKVDISGNPRALRRLKSACERAKRTLSYAVTTNIEIDGLFQGIDLLSSITRAKFEEINMEVFEECMETVDRCLKDANMEKSSVHDVVLVGGSSRIPKMQQLLQDFFNGKDLCKSVNPDEAVAYGAAVQAALLTKGIENVPDLVLKDVTPLSLGVSLKGDLMSVVIPRNTTIPIKKEKVIVTIEDDQYSVRLPVCEGERVKASDNNLLGSLTISGLPPAPRGYPFDVTFTINENGILSVSAEDKVTGNRNEIIISNDKGRLSDAEISKMIKEAENYKSEDEKFLKKAKAMNDLDYHVYKIRKALKKEEISSKLSWKEKEDIMSKISRATDMLDSQNEMEDIVAIEDFLKDLKVISERIIMVMEKIV 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01469 647 Gene3D Actin; Chain A, domain 4 263 346 - -
Vimu3g01469 647 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 418 571 IPR029047 -
Vimu3g01469 647 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 419 575 IPR029047 -
Vimu3g01469 647 Gene3D - 572 645 IPR029048 -
Vimu3g01469 647 PRINTS 70kDa heat shock protein signature 86 94 - -
Vimu3g01469 647 PRINTS 70kDa heat shock protein signature 174 194 - -
Vimu3g01469 647 PRINTS 70kDa heat shock protein signature 237 247 - -
Vimu3g01469 647 PRINTS 70kDa heat shock protein signature 503 519 - -
Vimu3g01469 647 PRINTS 70kDa heat shock protein signature 365 381 - -
Vimu3g01469 647 PRINTS 70kDa heat shock protein signature 397 417 - -
Vimu3g01469 647 PRINTS 70kDa heat shock protein signature 64 76 - -
Vimu3g01469 647 PRINTS 70kDa heat shock protein signature 34 47 - -
Vimu3g01469 647 PRINTS 70kDa heat shock protein signature 423 442 - -
Vimu3g01469 647 FunFam heat shock 70 kDa protein-like 99 154 - -
Vimu3g01469 647 ProSitePatterns Heat shock hsp70 proteins family signature 1. 38 45 IPR018181 -
Vimu3g01469 647 SUPERFAMILY Actin-like ATPase domain 34 219 IPR043129 -
Vimu3g01469 647 ProSitePatterns Heat shock hsp70 proteins family signature 3. 368 382 IPR018181 -
Vimu3g01469 647 FunFam Heat shock 70 kDa 263 346 - -
Vimu3g01469 647 FunFam Heat shock 70 kDa protein 417 571 - -
Vimu3g01469 647 Gene3D - 220 394 - -
Vimu3g01469 647 FunFam Heat shock cognate 70 kDa protein 2 347 394 - -
Vimu3g01469 647 SUPERFAMILY Actin-like ATPase domain 227 414 IPR043129 -
Vimu3g01469 647 Pfam Hsp70 protein 35 640 IPR013126 GO:0005524|GO:0140662
Vimu3g01469 647 Gene3D - 99 154 - -
Vimu3g01469 647 PANTHER HEAT SHOCK PROTEIN 70KDA 35 603 IPR013126 GO:0005524|GO:0140662
Vimu3g01469 647 Gene3D - 36 412 - -
Vimu3g01469 647 FunFam Heat shock protein 70 36 227 - -
Vimu3g01469 647 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 570 641 IPR029048 -
Vimu3g01469 647 ProSitePatterns Heat shock hsp70 proteins family signature 2. 231 244 IPR018181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01469 Vimu-Chr3 27620788 27622957 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01469 27 643 Calmodulin-binding Proteins AT3G12580 65.267 0.0 824