Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01461 ATGGCACCCAATAAAAGATTCGTAGCGGCCAACCGTGCAATGGGAAGTCTTGGAATTGATGAGTCGAAAGTGAAATCAGCGTTAAAGAAACTCCTCAAAGTGTTTGACAAAAACTGGGAACTTATAGAGGCAGAGAACTATAGAGTTCTAGTAGATGCTATATTTGAGGAGGACGATAATATGGTGCCCGAAGAGAAAAAGAAAATCCGGTCTGACGATGTACATGATACTCATCATTCTTTGCCTTCCTTTTCAAACAACCAGGAAGATGAGACAGAATGTGAAGAGGCTCAGATGCATAATGAAAGACCCCAACCTTTAAAAAGGCTGCGATTAAGAGGCCAGGACAGTCAGCCTTTGCATCCTATGACTAACATTGCCACCAGCCCTCCTTCGAAAAGGCCTAAATTAGAGGATAATGCATTACACCAGGGTTCTTCTGGGAAGAAACCTCAAAACAAGCCAGAGTCGTCTGTTGCGAATCCAAGGATTGAAGCACCGTTACTTAGACCACCAGATGACATTGTTGATAAGGGAAAGCAACCTGCATCAGCCCAAGTTTTGCAAAGAGGAAGAGAACTTACATCTGGAAGATCGTCCCCATCCACACCATCTAAAGAACGAACAGTTAAATCAGGGAAGTTTTTGATGCCAAACAACACAGTACCTCGTACGCAGGCACTTATCATACCCAAGGACGAGCCTATTGATGAAGTGCCTGATTATGGAATGCCCATTGCAGTGATTCTTCCTGAACCATCATGCGTAAGGGACTCGTCATTCAGTAATGGTGTAGCTGGAAAGCATGTCAACCATGATACTGTGACATCATCAGCATGCAGAAATAGAGTCAGAGATGAAGATGTTCTTCCTACCTCAAATGAAGAAGCCACTTGTGATGTAGAGATAGCCTCATCAACTCTTGGAGAAGTAAAACTTTCTTTGAGCTGCAGCTCAGCACTTTGGGGATCAAATTTTCACATGCCTAGTAGAGATGAACTCATAGAAATGATGGAGGCGAAATGCCAGCGTTCATATAAAATTGATGACCCAAATTTCTCTGTTATGAAACTGTTGATGGATGTATGTAATTGCATGTTGGAACTCACAAACAATTCTAATAATGATCCAGAAGAAGGTTCTACAGGGACATCCAATGTTGTTGATGTGTCAAAGGAATCACAAGAACCTGACACAGTGAGTGTGGAAAGAAACAAAGATTTGGACATCCTTTCTCATGTTTCAAATGGATCAATCAATGTTAATCCTTCTGCTGCATTGGTTTCTCCCCGAAGTTTCCTTCCTCGTACTGACCTGATTGGTCTGAATGATGCTGTCTTGCTTTCCAAGATGGACCAAACAACAAATGATTTTTCACAATTTAATGTAAAGAAGGAGCTGGAAGGTTCTATGTCTCCAAATTCACATAGTTTAGTGATTGTTCCACAGCATCAGCTGACATCTGATGATATAAGGTCTTTTTATGATGCTATTGACCTCACAAAAGGAGAAGAAAATGTTGAAATTCCTTGGGTGAATGAATATACTAATGATTTCCCAGCATCCTTTAACTACATACCCCGAAACCTTGTGTTCCAAGATGCTTATGTTAACATTTCTCTATCACGTATTGGCAGTGAGGACTGTTGTTCAACTTGTATGGGAAATTGTGTCTTGTCACCTTGTGCTTGTGCAAATAAAACTGGTGGTGAATTTGCTTATAGTTCTCAAGGCCTACTGAAGGAACAATTTTTGGAAGAATGCATTGCCACTAGTCGCAATCCACAAAACCATTTATTTTATTGCAAAATTTGCCCACTTGAAAGATCTAATAATGATGGTGGTTTAGAACCTTGTAAAGGACACTTAAAGAGGAAGTTTATTAAAGAATGCTGGAGCAAATGTGGCTGTGGGAAACAGTGTGGAAATCGGATTATCCAGCGAGGAATAACTTGCAAATTGCAGGTGTTTTTCACTTCAGAAGGTAAAGGATGGGGTCTTCGTACCTTAGAGGACCTGCCTAAAGGTGCATTTGTATGTGAGTTTGTTGGAGAAATTTTATCTATTAAAGAGTTGCACGAGAGGAACATGAAATGCACTGGAAAAGGGAAACATACATACCCAGTGCTACTGGATGCAAATTGGGATTCAGGAATGAAGAACAAAGAAGCTCTATGCTTGGATTCAGCTTCGTTTGGCAACATTGCTAGGTTTATCAATCACAGATGTTTTGATGCAAACTTGGTTGAGATCCCAGTTGAAGTTGAGGATCCTGGTCATTATTACTACCATTTTGCTTTTTTTACTTCTAGAAAAATAGCAGCATTTGAGGAGCTAACATGGGATTATGGCATCGCCTTTGATGATCATGATCATCCTATCAAGCTGTTCCAGTGCAGTTGTGGCAGTAAATTCTGCAGGCATATAAAGAGGTCAAACAGTAAGTTCATTCTGCAGCTATTCAGTCACTAA 2472 0.4053 MAPNKRFVAANRAMGSLGIDESKVKSALKKLLKVFDKNWELIEAENYRVLVDAIFEEDDNMVPEEKKKIRSDDVHDTHHSLPSFSNNQEDETECEEAQMHNERPQPLKRLRLRGQDSQPLHPMTNIATSPPSKRPKLEDNALHQGSSGKKPQNKPESSVANPRIEAPLLRPPDDIVDKGKQPASAQVLQRGRELTSGRSSPSTPSKERTVKSGKFLMPNNTVPRTQALIIPKDEPIDEVPDYGMPIAVILPEPSCVRDSSFSNGVAGKHVNHDTVTSSACRNRVRDEDVLPTSNEEATCDVEIASSTLGEVKLSLSCSSALWGSNFHMPSRDELIEMMEAKCQRSYKIDDPNFSVMKLLMDVCNCMLELTNNSNNDPEEGSTGTSNVVDVSKESQEPDTVSVERNKDLDILSHVSNGSINVNPSAALVSPRSFLPRTDLIGLNDAVLLSKMDQTTNDFSQFNVKKELEGSMSPNSHSLVIVPQHQLTSDDIRSFYDAIDLTKGEENVEIPWVNEYTNDFPASFNYIPRNLVFQDAYVNISLSRIGSEDCCSTCMGNCVLSPCACANKTGGEFAYSSQGLLKEQFLEECIATSRNPQNHLFYCKICPLERSNNDGGLEPCKGHLKRKFIKECWSKCGCGKQCGNRIIQRGITCKLQVFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILSIKELHERNMKCTGKGKHTYPVLLDANWDSGMKNKEALCLDSASFGNIARFINHRCFDANLVEIPVEVEDPGHYYYHFAFFTSRKIAAFEELTWDYGIAFDDHDHPIKLFQCSCGSKFCRHIKRSNSKFILQLFSH 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01461 823 SMART preset_2 497 636 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu3g01461 823 MobiDBLite consensus disorder prediction 68 209 - -
Vimu3g01461 823 MobiDBLite consensus disorder prediction 145 159 - -
Vimu3g01461 823 Pfam Pre-SET motif 501 644 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu3g01461 823 Gene3D - 1 60 IPR043017 -
Vimu3g01461 823 ProSiteProfiles SET domain profile. 652 784 IPR001214 GO:0005515
Vimu3g01461 823 SUPERFAMILY SET domain 506 807 IPR046341 -
Vimu3g01461 823 CDD SET_SETDB-like 521 784 - -
Vimu3g01461 823 MobiDBLite consensus disorder prediction 372 403 - -
Vimu3g01461 823 Pfam SET domain 664 784 IPR001214 GO:0005515
Vimu3g01461 823 Pfam Ubiquitin-binding WIYLD domain 5 60 IPR018848 -
Vimu3g01461 823 MobiDBLite consensus disorder prediction 188 209 - -
Vimu3g01461 823 MobiDBLite consensus disorder prediction 372 395 - -
Vimu3g01461 823 ProSiteProfiles Pre-SET domain profile. 549 649 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu3g01461 823 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 822 IPR025776 -
Vimu3g01461 823 MobiDBLite consensus disorder prediction 93 110 - -
Vimu3g01461 823 SMART set_7 652 790 IPR001214 GO:0005515
Vimu3g01461 823 Gene3D SET domain 482 792 IPR046341 -
Vimu3g01461 823 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 814 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01461 Vimu-Chr3 27518059 27523114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01461 628 809 C2H2 Transcription Factor Family AT2G23740 40.741 2.59e-29 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu3g01461 Pre-SET 8.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01461 - - vun:114190802 1491.09