Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01457 ATGACAAATAGTCTGGTTTGGGTATCAAAAGGTATTTTGCTGGTGAGCATTATGGGGAAAATAATGGAAGCACATCCTACTTTCTCCATTGAAAGATCAAAGCAACTCAATAGCATGGGGATGTCTGGAGCACTTTCTTCATCTTTGTCAATCCTTCCAATACCCACAGAAGATATGTATCCTAGGCTGCCTGAATCACAGTTGGATATTGTAGAACAAGAACTTATGACAAGACCTTATACTCATTCAAGTTATTTGAATTCCAATGGAGTAGTTGGGCATATTTTATCGTCTTCCTCTGGATATTCAATTGACCTTCATCACTCATCCCTTTCACCTGATGAAAAACACTCTACTAACGCTCATTTTATTTCACAATCATCAACCAACATTGCCGAATTTCCATTATCATATTCTTCGAGTACTGCACCACCAACTTCAGCAACACCAACCCATTTTTCCAAAGAAAACAGTGCTTCCTGGCATACAGAGTCCCTGCCAAGTTTTCTGGATTTTCCTGCACATGATTCAATGGACGATAATAGGGTAGAAAGTAGTGATTGCCCTATAATGGCATCCGAAGAGTATTGTAAGCAAAATGATTGGCAGGAGTGGGCTGAGCGGCTAATCAGTGATGATGACACTTTGACTTCTAATTGGGATGACCTTCTCTCTGACAACATTCGAGACATTGAGCCAAAGGTTGCAAAACCACTTTCACAGTTTCCAGGACATCAATCCCAAGGTCTACAACAACTTCCTGCTTCATATGGAGACAATTGCTCTGGAGCTACCCTCTCCTCCTCAGCAAATTCTACTCCTGCCAAGTCACGAATGCGTTGGACACCAGAACTTCACGAGGCGTTTGTGGAGGCTGTCAACCATCTTGGGGGAAGTGAAAGAGCTACTCCAAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTGAAAAGCCATTTGCAGATGAAGAAATACAGGACAGCTAGATATAGACCGGAGTCATCTGAAGGAATTGCGGAGAAAAAAGCAGGTTCCATTGAAGAGATGTCATCTCTAGATTTAAAAACTGGTATTGAGATCACTGAAGCTCTACGACTACAAATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGATTCAAAGAAATCTGCAGCTGCGAATAGAAGAACAAGGAAGGTACCTCCAGATGATGTTTGAGAAGCAACGTAAATCTGAAACTGAAGCGTTGAAGGCATCATCATCTACCATTGAGAGTCAATCTGGAGTATCTTCGAATGCCACGAGAGACTTCCCGGTCAAAAATGTTTTGGAAGCATCAGAAGTGGACCATTGTAGGTCAGGACCTGATCAAGCTAACCGCAGTACCACAGTTGAGGAAGGCTCGCTGGAAAAGGGTCGGAATCCTGATTCTCCCAAAACTCAACATGGTATTGCTAGTGCTGATAGTGCACAAGCCCCAAAACGTCAAAGAACAGAGTAA 1497 0.4255 MTNSLVWVSKGILLVSIMGKIMEAHPTFSIERSKQLNSMGMSGALSSSLSILPIPTEDMYPRLPESQLDIVEQELMTRPYTHSSYLNSNGVVGHILSSSSGYSIDLHHSSLSPDEKHSTNAHFISQSSTNIAEFPLSYSSSTAPPTSATPTHFSKENSASWHTESLPSFLDFPAHDSMDDNRVESSDCPIMASEEYCKQNDWQEWAERLISDDDTLTSNWDDLLSDNIRDIEPKVAKPLSQFPGHQSQGLQQLPASYGDNCSGATLSSSANSTPAKSRMRWTPELHEAFVEAVNHLGGSERATPKGVLKLMKVEGLTIYHVKSHLQMKKYRTARYRPESSEGIAEKKAGSIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQRKSETEALKASSSTIESQSGVSSNATRDFPVKNVLEASEVDHCRSGPDQANRSTTVEEGSLEKGRNPDSPKTQHGIASADSAQAPKRQRTE 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01457 498 FunFam Myb family transcription factor 275 335 - -
Vimu3g01457 498 Gene3D - 275 336 - -
Vimu3g01457 498 MobiDBLite consensus disorder prediction 414 436 - -
Vimu3g01457 498 NCBIfam myb-like DNA-binding domain, SHAQKYF class 276 331 IPR006447 GO:0003677
Vimu3g01457 498 Pfam Myb-like DNA-binding domain 278 327 IPR001005 -
Vimu3g01457 498 SUPERFAMILY Homeodomain-like 273 330 IPR009057 -
Vimu3g01457 498 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 273 333 IPR017930 -
Vimu3g01457 498 Pfam MYB-CC type transfactor, LHEQLE motif 363 410 IPR025756 -
Vimu3g01457 498 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 258 468 IPR044848 GO:0003700
Vimu3g01457 498 MobiDBLite consensus disorder prediction 411 498 - -
Vimu3g01457 498 Coils Coil 366 386 - -
Vimu3g01457 498 MobiDBLite consensus disorder prediction 478 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01457 Vimu-Chr3 27472039 27478139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01457 53 419 G2-like Transcription Factor Family AT4G28610 48.684 8.01e-98 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu3g01457 Myb_DNA-binding 4.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01457 - - gmx:100793593 755.747