Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01448 ATGGAGGAAGAGGAGGATCGAATTTTGCTCTCTAGTTTGGGCGTAAAATCTGCCAATCCCGAAGACATTGAACGCGACGTTTTGGAAAAGGCTACTAAGAATGATTCAGTGACCGTTACTGAGGCTGAAGGTAGTGCCGAGGAAGAATGTTCTGATTTACCTGAAAATGTCGATCCATCGGCTAATGCTAAAGCTGAACTTCATCAGAAATTGAGAGCTGTTCAATTTGAAATTGATGCCGTTGCCTCCACCGTTGAGCGGTTGAGAAATGTGGAAAATAATGAAGAATGTAGTGATGCTGGTGAAGACGACTTGGTGTCGGCGTTTGCTGAGGTTGATTCCTCCAACAATTCAAATCTTCAGTGTGCTCTTGCTGCCGATAGGTTGAGGAGTCTGAAGAAGACGAAAGCTCAACTAGAGAAAGAGCTTTTGAATTTGTCCAAGGATGATGCTTCCAAAAGTGTTGAGGATGAACGATTGATCTTTAGTTTAGTTAGGGAAGAACGGAAGCCCAAGAGGAAGGTTAAAGAAGATAAAAAGTCAGACAAAAGCAAGGGAAAACGACTTAAGAAAGTTTCGTTTGACGATGATGTTGAGTTTGATACTGTTCTAGATGCAGCCTCTGCCGGCTTTGTTGAAACAGAAAGGGATGAACTGGTGAGAAAAGGAATTTTAACCCCTTTTCATAAGTTAAAGGGCTTTGAGCGCCGTTTTCAACAACTAGAAACATCAACTAGTCATAATGCAGCTGAGGAGGAAAATGCTAGTGATCTTGCTGCTGCAAGTGTTGAAAGAGCTGCCAAATCTATGTATGAGGCAGCAAGATCTCGCCCAACCACCAAGCTGCTTGAGCCTCAAGATGCACCGAAGCTTGATGCACCCACTTTTCCATTTCGAAGGCTCAGGAAACCACTACAATCTTCCAAAGCTCTAGATAGAGAAATGGAGCTAAATAAAGATTCAAAAAAGAAGAAGAGGCGGCCTCTGCCTGGAAGAAAGTGGACCAAGCGTGTTTCTTGCGATGATACACATATGGAAGAAAGTGAAAATGCAGATGGTTGCTTAGATAGTTCCAGTTTTGAAAATTTAGAAGAACAAGGCATTGATCTTGACGATCATGAATCTTATGTAACGTTAGAAGGTGGGCTGAAAATCCCCAATAAGATATTTGAAGCTCTGTTTGACTATCAAAAGGTCGGTGTTCAGTGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGACTTGGTAAAACTGTCCAGATCTTATCTTTCCTTGGTGCACTGCACTATAGTGGCATGTACAAACCTAGCATTATTGTCTGCCCCGTTACACTCTTGCGACAGTGGAAAAGGGAAGCTAACAAGTGGTACCCAAAATTCCATGTAGAGCTTTTACATGAATCGGCTCAAGATTCTGCTCCTAGGAAGAAGCGAGCTAAATCTGAAGAAACAGACTCTGAAACCAATAGTTCAAGTGACAATGATTATGAAAAAAGTGAACCATCTAGAAACACAAAAAAATGGGAATCCCTGATAAATCATGTCATGAGATCAGAATCTGGATTACTTATCACCACTTATGAGCACCTCAGAATATTGGGGGATCAGTTGCTTGATATTCAATGGGGTTATGCAGTTCTTGATGAAGGGCATAAAATAAGGAATCCAAATGCTGAAGTTACCCTCGTTTGCAAGCAGCTACAAACTGTACATCGAATCATAATGACTGGTGCACCTATTCAGAATAAACTGACTGAACTATGGTCATTGTTTGATTTTGTTTTTCCTGGAAAATTGGGTGTTTTGCCTGTATTCGAAGTTGAATTTGCAGTTCCTATAGCAGTTGGTGGGTATGCAAATGCTTCACCTTTGCAAGTATCCACTGCATACAGGTGTGCTGTGGTGCTGCGTGATTTAATCATGCCTTATCTTCTCCGACGGATGAAGGCTGATGTGAATGCCCAACTTCCAAAGAAGACGGAGCATGTTCTATTTTGCAGCCTTACACCAGAACAAGTATCTGCTTACAGAGCATTTTTAGCTAGCACTGATGTGGAGCAAATATTGGATGGACACAGGAATTCTCTTTATGGAATTGATGTGATGCGCAAGATCTGTAACCACCCTGATCTACTTGAAAGGGATCATGCCTTCAGTGATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTTGGTCAAGTGCTTAATGTTTGGAAGGAACAGGGTCACCGTGTTCTCCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAATTTTTTGACATCTTCTGGTCATGTTTATCGGAGACTGGATGGTCTCACTCCTGTTAAACAGAGAATGGCCTTAATAGATGAATTTAATGCCTCAAGTGAAATATTTATTTTCATTTTAACGACCAAAGTTGGGGGTTTGGGGACCAATCTTACAGGTGCAGATAGGGTGATCATCTTTGACCCTGACTGGAATCCCTCAAATGATATGCAGGCGAGAGAGCGGGCTTGGCGCATTGGTCAGAAGCGGGATGTAACCGTGTATAGGTTGATAACACGGGGAACTATTGAGGAGAAAGTGTACCACCGTCAGATTTACAAACATTTTCTTACAAATAAGATATTGAAGAATCCACAACAGAAAAGGTTCTTTAAGGCCCGGGATATGAAAGATCTTTTCGTACTTAACGTGGATGAAGGAACTGGGTCAACCGAAACTTCAAATATTTTTAGTCAAATATCTGAAGAAGTGAATGTCATTGGGACACAGAAAGAAAATAAGGATAAGGATGAACATAGCCAAACTGCCAGACTGGATTCTGAAGATGTTGCAGTTAATAATGATGACAAGTCGGAGAGAAAGGGGAAAGAGAAGGTTGAACTTTATAATGGGGTTGATGATGGAACTGATATATTGAAAAGCCTTTTTGATGCCAATGGGATACATAGTGCCGTGAACCATGATTTGATCATGAATGCCCATGATGAGGAGAAGATGAGACTTGAGGAGCAAGCATCCCAAGTTGCACGAAGAGCTGCAGAAGCTTTACGTAAGTCACGAATGCTCAGAAGCCATGATAGTGTATCTGTTCCCACGTGGACAGGAAGGTCAGGAACTGCTGGTGCACCGTCATCTGTTCGTCAGAAGTTTGGTTCAACCGTGAACCCCCTGTTGGTAAATAAAGGCAAGGTTGACGAGTTACCCAGCAAGGGAACGGCGAAATTAAATGGATTCGCTGCTGGGGCATCCGCAGGTAAAGCTTTATCTTCTGTCGAACTTTTAGCTCAAATTCGAGGTAACCAAGAGAAAGCCATTGGTGCCGGGCTCGAACATCAGTCTAGCGTGTTGTCAAGTTCCACGAATCAAGCAAGATCTGTAGATGTTAGATCTTTCAGGGCTACTGCAAGTTCATCTGGATTACAACCTGAAGTATTGATTCGGCAAATCTGCACTTTTATACAACAGCGAGGGGGTAGTTCTGATTCAGCCAGCATAGTTCAGTATTTCAAGGAACGTATTCCCTCACAAGACCTTGCCCTGTTCAAGAATCTGTTAAAGGAAATTGCGACTCTGCATAAAGGATCAAATGGATCTCATTGGGTTCTGAAACCAGACTATCAATTCTGA 3657 0.4214 MEEEEDRILLSSLGVKSANPEDIERDVLEKATKNDSVTVTEAEGSAEEECSDLPENVDPSANAKAELHQKLRAVQFEIDAVASTVERLRNVENNEECSDAGEDDLVSAFAEVDSSNNSNLQCALAADRLRSLKKTKAQLEKELLNLSKDDASKSVEDERLIFSLVREERKPKRKVKEDKKSDKSKGKRLKKVSFDDDVEFDTVLDAASAGFVETERDELVRKGILTPFHKLKGFERRFQQLETSTSHNAAEEENASDLAAASVERAAKSMYEAARSRPTTKLLEPQDAPKLDAPTFPFRRLRKPLQSSKALDREMELNKDSKKKKRRPLPGRKWTKRVSCDDTHMEESENADGCLDSSSFENLEEQGIDLDDHESYVTLEGGLKIPNKIFEALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTVQILSFLGALHYSGMYKPSIIVCPVTLLRQWKREANKWYPKFHVELLHESAQDSAPRKKRAKSEETDSETNSSSDNDYEKSEPSRNTKKWESLINHVMRSESGLLITTYEHLRILGDQLLDIQWGYAVLDEGHKIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEVEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTPEQVSAYRAFLASTDVEQILDGHRNSLYGIDVMRKICNHPDLLERDHAFSDPDYGNPERSGKMKVVGQVLNVWKEQGHRVLLFTQTQQMLDIFENFLTSSGHVYRRLDGLTPVKQRMALIDEFNASSEIFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSNDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFVLNVDEGTGSTETSNIFSQISEEVNVIGTQKENKDKDEHSQTARLDSEDVAVNNDDKSERKGKEKVELYNGVDDGTDILKSLFDANGIHSAVNHDLIMNAHDEEKMRLEEQASQVARRAAEALRKSRMLRSHDSVSVPTWTGRSGTAGAPSSVRQKFGSTVNPLLVNKGKVDELPSKGTAKLNGFAAGASAGKALSSVELLAQIRGNQEKAIGAGLEHQSSVLSSSTNQARSVDVRSFRATASSSGLQPEVLIRQICTFIQQRGGSSDSASIVQYFKERIPSQDLALFKNLLKEIATLHKGSNGSHWVLKPDYQF 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01448 1218 CDD CSB_WHD 1151 1217 - -
Vimu3g01448 1218 SMART ultradead3 389 615 IPR014001 -
Vimu3g01448 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 654 IPR027417 -
Vimu3g01448 1218 CDD DEXHc_ERCC6 393 603 - -
Vimu3g01448 1218 SMART helicmild6 767 850 IPR001650 -
Vimu3g01448 1218 MobiDBLite consensus disorder prediction 478 510 - -
Vimu3g01448 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 656 908 IPR027417 -
Vimu3g01448 1218 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 741 900 IPR001650 -
Vimu3g01448 1218 FunFam Protein CHROMATIN REMODELING 8 371 653 - -
Vimu3g01448 1218 Pfam Helicase conserved C-terminal domain 748 850 IPR001650 -
Vimu3g01448 1218 MobiDBLite consensus disorder prediction 1035 1057 - -
Vimu3g01448 1218 MobiDBLite consensus disorder prediction 305 323 - -
Vimu3g01448 1218 Gene3D - 660 970 IPR027417 -
Vimu3g01448 1218 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 405 604 IPR014001 -
Vimu3g01448 1218 CDD SF2_C_SNF 736 861 - -
Vimu3g01448 1218 MobiDBLite consensus disorder prediction 269 356 - -
Vimu3g01448 1218 MobiDBLite consensus disorder prediction 1026 1057 - -
Vimu3g01448 1218 PANTHER SNF2/RAD54 FAMILY MEMBER 159 1200 - -
Vimu3g01448 1218 Coils Coil 1001 1028 - -
Vimu3g01448 1218 MobiDBLite consensus disorder prediction 932 965 - -
Vimu3g01448 1218 Gene3D - 368 653 IPR038718 -
Vimu3g01448 1218 Pfam SNF2-related domain 396 718 IPR000330 GO:0005524|GO:0140658
Vimu3g01448 1218 FunFam DNA excision repair protein ERCC-6 661 940 - -
Vimu3g01448 1218 MobiDBLite consensus disorder prediction 334 351 - -
Vimu3g01448 1218 Coils Coil 122 149 - -
Vimu3g01448 1218 MobiDBLite consensus disorder prediction 26 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01448 Vimu-Chr3 27402543 27409205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01448 386 903 RAD5 or RAD16-like Gene Family AT1G02670 23.051 1.12e-25 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu3g01448 SNF2_N 9.9e-62 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01448 K10841 - gmx:100820025 2032.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01448 3 27402543 27409205 Vimu3g01448 3 27402543 27409205 ECH