Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01445 ATGATCAACTTTCGTAACACCTCACCTACTTATAATAGTCGAACCATCTTGGAAAAGAAGTTGGCTGATGCAGATGTCTCCGAGGAGGATCAAAACAACCTGCTTAAATTTTTAGAGAAAAAGGAAACTGAATATATGCGCCTTCAGAGGCATAAGATGGGTGTTGATGATTTTGAGTTATTAACAATGATTGGAAAAGGAGCATTTGGAGAGGTCAGAGTCTGTAGGGAAAAGACTAGTGGTCATGTGTATGCAATGAAGAAGCTAAAAAAATCAGAGATGCTCCGCAGAGGCCAGGTTGAGCATGTTAAAGCTGAAAGGAATCTCCTCGCAGAGGTTGACAGCAATTGCATAGTCAAACTTTATTGTTCATTCCAGGATGCTGAATATTTGTATCTTATTATGGAGTATCTACCGGGTGGGGATATGATGACTCTACTAATGAGAAAGGATACCTTGACCGAAGATGAAGCCAGATTTTATGTTGGAGAAACTGTTCTGGCCATTGAATCTATACATAAACACAATTATATACACAGGGATATCAAGCCAGACAATTTGTTACTTGAAAGATACGGCCACTTGAAATTGTCAGATTTTGGACTTTGTAAACCATTAGATTGCAATACACTTGAAGAAAAAGATTTTTCTGTGGGTCAGAATGTGAATGGAACTCCACAAAACGAAGAGCGGACAACTCCAAAACGTTCACAACAAGAACAACTTCAACATTGGCAAATGAACAGGAGAACACTTGCTTATTCCACAGTTGGTACACCAGATTATATTGCTCCAGAAGTTCTTTTGAAGAAAGGTTATGGGATGGAATGTGATTGGTGGTCACTTGGAGCGATTATGTATGAAATGTTGGTGGGATATCCACCTTTTTATTCTGATGATCCGATGTTGACTTGTAGGAAGATTGTAAATTGGAAAGCTTATTTGAAATTTCCTGAAGAAGCTAGGCTGTCCCCAGAAGCTAAAGATCTTATTAGCAAACTTTTGTGTAATGTAAATCAGAGGCTGGGGTCAAATGGTGCAGATGAAATAAAGGCTCATCCATTCTTCAAAGGTGTTGAATGGGATAAGCTGTATCATATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGACACTCAAAATTTTGAAAAGTTTGATGAGTCTGACAGCCAAGGTCAATCATCGTCAAGATCTGGTCCATGGAGGAAGATGCTTTCATCTAAGGACTTAAATTTTGTTGGATACACATACAAGAACTTTGAAATTGTCAACGATTATCAAGTTCCTGGGATGGCTGAACTGAAGAAGAAACAGTCCAAACCAAAGAGGCCAACCATCAAGTCACTTTTCGTGATAAAACTGGCTGACATTATTGATTGTGAATCAGAAACACCAGAGCAAGAGTTGTCTGAAACATCTGCTCAAGGAAGCTTTTTAAAGCTCTTGCCACCCCAGTTAGAGGTATCTCGCAGAGACAAGAATCTTCCTCCCAGGTCCTAA 1506 0.3924 MINFRNTSPTYNSRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTSGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDAEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLERYGHLKLSDFGLCKPLDCNTLEEKDFSVGQNVNGTPQNEERTTPKRSQQEQLQHWQMNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMLTCRKIVNWKAYLKFPEEARLSPEAKDLISKLLCNVNQRLGSNGADEIKAHPFFKGVEWDKLYHMEAAFIPEVNDELDTQNFEKFDESDSQGQSSSRSGPWRKMLSSKDLNFVGYTYKNFEIVNDYQVPGMAELKKKQSKPKRPTIKSLFVIKLADIIDCESETPEQELSETSAQGSFLKLLPPQLEVSRRDKNLPPRS 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01445 501 Pfam Protein kinase C terminal domain 375 419 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vimu3g01445 501 ProSitePatterns Protein kinases ATP-binding region signature. 64 87 IPR017441 GO:0005524
Vimu3g01445 501 MobiDBLite consensus disorder prediction 218 240 - -
Vimu3g01445 501 FunFam Non-specific serine/threonine protein kinase 29 141 - -
Vimu3g01445 501 ProSiteProfiles AGC-kinase C-terminal domain profile. 357 429 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vimu3g01445 501 FunFam Non-specific serine/threonine protein kinase 255 374 - -
Vimu3g01445 501 SMART serkin_6 58 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01445 501 CDD STKc_NDR_like 56 420 - -
Vimu3g01445 501 SUPERFAMILY Protein kinase-like (PK-like) 31 409 IPR011009 -
Vimu3g01445 501 CDD MobB_NDR_LATS-like 14 53 - -
Vimu3g01445 501 SMART pkinase_C_6 357 421 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vimu3g01445 501 Gene3D Transferase(Phosphotransferase) domain 1 144 373 - -
Vimu3g01445 501 Pfam Protein kinase domain 59 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01445 501 ProSiteProfiles Protein kinase domain profile. 58 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01445 501 PANTHER SERINE/THREONINE-PROTEIN KINASE 33 408 - -
Vimu3g01445 501 Gene3D Phosphorylase Kinase; domain 1 49 143 - -
Vimu3g01445 501 MobiDBLite consensus disorder prediction 465 501 - -
Vimu3g01445 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Vimu3g01445 501 FunFam Non-specific serine/threonine protein kinase 142 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01445 Vimu-Chr3 27356871 27362233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01445 14 489 AGC Kinase Gene Family AT4G14350 79.036 0.0 785
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vimu3g01445 Pkinase 2.4e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01445 K08790 - gmx:100820558 894.804