Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01444 ATGATTCGTTCACACATGCATGAAACATGGGATCACTACTCAAATATTACTTCCTTCCCATTTTCAGCTCCAACCCCATCAAACCTATATCCAAAGCCAGCAACAGAAAACCACTGCCTAAACTTGGGGCAGAATGAAGTGTCTGATTGGATGGAGGAACACATTGATAACTTTGTTCCCTCACTTTTACCCAACAACTTGAGTGAAAGAAAAGCTTCAGGCTTTAGACCCCAATTTGAGGCCATCACCAACGACCCTCCCAACTTAAATCATAGCTACAATGTCTGTGATCAAGGGTTGAGCCTCATAAGCCTTCTAATGGAGTGTGCAGTGGCAATTTCAGTTGACAACCTGGGTGAGGCTCATAGGATGTTACTAGAGCTAACACAAATGGCCTCACCCTACAAAGCATCATGTGGTGAACGCGTTGTTGCTTATTTTACCAAGGCCATGACTTGCAGGGTCATGAATTCTTGGCTTGGGATGTGTTCCCCTTTGGTTGATCACAGAAACATTAACTCAGCATTCCAAGTCTTCAACAACGTTTCCCCTTTCATAAAATTTGCTCACTTCACTTCGAACCAGGCAATCCTTGAGGCAGTAAACCATTGTGACAGTATTCACATAATTGACTTGGACATCATGCAAGGGCTGCAATGGCCAGCTTTTTTCCATATATTAGCCACCAGAATGGAGGGTCCACCACAGGTAACCATGACATGCTTGGGAACCTCAACGGAACTCCTCATTGAAACTGGAAAACAACTCTCCAACTTTGCAAGAAGGCTTGGTATGTCATTCAAGTTCCACCCCATTGCAAGCAAGTTTGGGGAAGTAATTGATGTGTCCATGCTGCATGTAAAGCCTGGCGAGGCAGTGGCAGTGCATTGGTTGCAGCATTCACTGTACGATGCAACTGGACCTGATTGGAAAACACTGAGACTCCTTGAAGAGTTGGAGCCAAGAATAATCACCTTGGTGGAGCAAGATGTGAACCATGGAGGCTCATTCTTGGATCGTTTTGTGGGCTCCTTGCACTACTACTCAACCCTGTTTGATTCTCTTGGAGCATACTTGCACTTTGATGATGAAAACAGGCACAGAGTGGAGCATGGTCTTCTCTCTAGGGAAATCAACAATGTGTTGGCCATAGGAGGCCCTAAAAGGAGTGGTGAAGACAAGTTTAGGCAGTGGAGAAGAGAGCTTGCTAATCACTATTTTCAGCAGATTCCCATGAGTGCCAATTCAATGGCTCAAGCTCAGTTGATATTGAACATGTTTTCACCAGCTTATGGGTATAGCCTTGCACAAGTTGATGGCACATTAAGGCTTGGATGGAAGGATACAAGTTTGTACACAGCTTCTGCATGGACCTGTTGTACTTCTAACTAG 1392 0.4468 MIRSHMHETWDHYSNITSFPFSAPTPSNLYPKPATENHCLNLGQNEVSDWMEEHIDNFVPSLLPNNLSERKASGFRPQFEAITNDPPNLNHSYNVCDQGLSLISLLMECAVAISVDNLGEAHRMLLELTQMASPYKASCGERVVAYFTKAMTCRVMNSWLGMCSPLVDHRNINSAFQVFNNVSPFIKFAHFTSNQAILEAVNHCDSIHIIDLDIMQGLQWPAFFHILATRMEGPPQVTMTCLGTSTELLIETGKQLSNFARRLGMSFKFHPIASKFGEVIDVSMLHVKPGEAVAVHWLQHSLYDATGPDWKTLRLLEELEPRIITLVEQDVNHGGSFLDRFVGSLHYYSTLFDSLGAYLHFDDENRHRVEHGLLSREINNVLAIGGPKRSGEDKFRQWRRELANHYFQQIPMSANSMAQAQLILNMFSPAYGYSLAQVDGTLRLGWKDTSLYTASAWTCCTSN 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01444 463 Pfam GRAS domain family 102 458 IPR005202 -
Vimu3g01444 463 ProSiteProfiles GRAS family profile. 93 458 IPR005202 -
Vimu3g01444 463 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 71 454 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01444 Vimu-Chr3 27352449 27353927 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01444 97 458 GRAS Transcription Factor Family AT3G54220 55.827 6.39e-137 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu3g01444 GRAS 4.2e-104 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01444 - - gmx:100775656 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01444 3 27352449 27353927 Vimu3g01444 3 27352449 27353927 ECH