Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01443 ATGGGAGAGCTCGTGATAGTAAGGAGGCACATTTCCATCATAGTGGCTTGCTTGAACAGTGTTCATAGTGAAGGCTCACTCATGGCAAGAGTGGTGGCTCGTGGAGATAAATCTTTGCTTCTACTCTTTTGCGATCACTTATGTCGTGTTCGCAAGGGGTTATGCCGCTACAACAATGGTGGTTTCATGGTCGTCAAGTGCTTCTTGGTTCTCTATTGTGGCAGTCCTTGTTCTATGCAGGCTCCTCCCCTTTTGCTTTCCCAACCCGTTTCGCGAAAAAGTTCATTTTTTTGGCCCCTTTTGGGGTTCCTAATAGATCATTGCAGCGGCTGCTGGTTGAGGTGCGGTGAAGGTCGTCCCATCATGGAGCATGCGATTGGTGGCAAGTTTAAATTGGGAAGGAAAATTGGGAGCGGGTCTTTTGGGGAGCTCTATTTAGGTGTTAATATACAAACTGGAGAGGAGGTGGCTGTTAAGCTGGAGCCTGTGAAGACCAGGCATCCACAGCTTCACTATGAGTCAAAACTGTATATGCTTCTTCAAGGAGGGACGGGGATTCCCCACCTCAAGTGGTTTGGAATTGAGGGAGACTACAATGTCATGGTTATTGACCTTCTTGGACCAAGTTTGGAAGATTTGTTCAATTATTGTAACCGGAAGTTCTCGTTGAAGACAGTGTTAATGCTTGCTGATCAGCTGATTAACAGAGTTGAATATATGCATTCCAGAGGTTTCCTTCACCGTGACATCAAGCCCGACAATTTCTTAATGGGTCTAGGACGGAAAGCAAATCAAGTGTATGCCATTGATTATGGCCTTGCAAAAAAATATAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGTACAGCACGCTATGCAAGTGTCAATACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTAGAATCTCTTGGTTACGTGCTCATGTATTTCTTAAGAGGAAGTCTTCCCTGGCAGGGACTAAAGGCTGGCACCAAAAAACAAAAATATGATAAAATCAGTGAGACAAAGGTGTCTACTCCCATAGAGGTGCTTTGCAAATCTTATCCCTCTGAATTTGTATCATACTTCCACTATTGCCGTTCATTGCGATTTGAGGACAAACCAGATTATTCATATTTAAAGAGACTTTTCCGAGACCTGTTTATTAGAGAAGGCTATCAATTTGACTACATTTTCGACTGGACTATGTTGAAGTATCCACAGATCAGTAGTAGCTCAAGAGGACGGCATGGCACTGGCAAGGCAGCTGGGCAAGCAAGTCCACATGTACAAAAGCCAGAAAAAATCTCAGTTGGGAAAGACATCCGAGAGAAATTCTCTGGTGCAGTTGAAGCATTCTCCAGGAGGAATCCTGCAGGTTCGAGTCCTCACGTTGATAACGTCAAACAGAGGAGTTTTGAGGATCTACCGGTGCAAAAGGATATGCACTATGGCCAGCACAATACTGGTCGATATGGCAGCAGTTCTAGAAAAGCCATGATCACATCAAACAAGCCGGTTTCCTCAGGTGATCATACTGGCAGGCCAACCATGACTGGGAGTCGTCCATCTGGTTCTAATAGAGTTCAACCGGCATATGACACCAAACAAGCAAATTATGCACGCGGTGCTGGTGTCCGAGGCAGAGGCAACCGTGATGATCCTCTGAGAAGCTTTGAGCTCCTCAACATCAGGAAGTAA 1731 0.45 MGELVIVRRHISIIVACLNSVHSEGSLMARVVARGDKSLLLLFCDHLCRVRKGLCRYNNGGFMVVKCFLVLYCGSPCSMQAPPLLLSQPVSRKSSFFWPLLGFLIDHCSGCWLRCGEGRPIMEHAIGGKFKLGRKIGSGSFGELYLGVNIQTGEEVAVKLEPVKTRHPQLHYESKLYMLLQGGTGIPHLKWFGIEGDYNVMVIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYAIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISETKVSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYIFDWTMLKYPQISSSSRGRHGTGKAAGQASPHVQKPEKISVGKDIREKFSGAVEAFSRRNPAGSSPHVDNVKQRSFEDLPVQKDMHYGQHNTGRYGSSSRKAMITSNKPVSSGDHTGRPTMTGSRPSGSNRVQPAYDTKQANYARGAGVRGRGNRDDPLRSFELLNIRK 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01443 576 Gene3D Transferase(Phosphotransferase) domain 1 116 456 - -
Vimu3g01443 576 FunFam Putative Casein kinase I 122 206 - -
Vimu3g01443 576 SMART serkin_6 130 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01443 576 PANTHER CASEIN KINASE-RELATED 128 467 - -
Vimu3g01443 576 MobiDBLite consensus disorder prediction 512 567 - -
Vimu3g01443 576 ProSitePatterns Protein kinases ATP-binding region signature. 136 159 IPR017441 GO:0005524
Vimu3g01443 576 SUPERFAMILY Protein kinase-like (PK-like) 126 411 IPR011009 -
Vimu3g01443 576 ProSiteProfiles Protein kinase domain profile. 130 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01443 576 Pfam Protein kinase domain 131 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01443 576 CDD STKc_CK1_delta_epsilon 129 403 - -
Vimu3g01443 576 MobiDBLite consensus disorder prediction 512 544 - -
Vimu3g01443 576 FunFam Casein kinase 1-like protein 122 451 - -
Vimu3g01443 576 MobiDBLite consensus disorder prediction 422 443 - -
Vimu3g01443 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01443 Vimu-Chr3 27268339 27277124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01443 120 334 MAP Kinase Kinase Kinase AT3G06030 25.778 9.62e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vimu3g01443 Pkinase 7.8e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01443 K08960 - gmx:100789031 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02699 6 23527237 23533509 Vimu3g01443 3 27268339 27277124 PCT