Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01429 ATGGCCATGAGTACTGCCTCAGCTACTGGTTCTCACTCCCGAAATGGATTCCGTTTCTCGGACCAGGAAAATGGAGACTACAATCAACACAACTATGGTCAAGCCTTCTCTGTGGCCGGAAGTGAGGATTTTGAAGGACAGAAAGCATTCTATAGCAATGAAGAGAAACGGAAAGATAAGAAAAGTTTAATGAGCAACGATCACGAAGACGACAATCTTTTGGCTGAGGCAAGGCAACCATTGTGGCGCAAGGTTCCAATAGCTTCAAGCCTAATCAACCCATATCGCATAGTCATAATCTTGCGTGTGGTTATCCTAGTTTTCTTCTTCCACTTGCGCATCACAACTCCAGTGCATGATGCAATTGCCTTATGGATAATCTCTGTAGTCTGTGAAATCTGGCTTGCATTATCTTGGATTGTTGACCAACTCCCCAAGTGGTTCCCTATTACTCGTGAAACTTACCTTGAACGTTTGTCCTTAAGGTTTGAGCGTGAAGGGGAGCCAAACCTTCTAGCCCCGGTTGATATCTTTGTAACCACTGCAGACCCTTTTAAGGAACCACCTATTATAACAGCAAACACGGTTTTATCAGTCTTGTCTGTTGATTACCCTGTTGATAAGGTTAGCTGCTATGTCTCAGATGACAGTGCTTCAATCCTTCTCTTTGATACCTTGTCAGAAACTGCCGAGTTTGCTAGAATATGGGTTCCTTTTTGTAACAAGTACAACATTGAGACAAGGGCACCTGAGTTTTATTTCTCTGAGAAACTTGATTACTTGAAAGATAAGGTGCATCCAACATTTGTTAAGGATCGCAGGGCTATGAAGAGAGAATACGAAGAATTCAAGGTGAAAATTAACATACTGGTTGCAAAGGCTCAGAAGAAACCAGAAGAAGGTTGGGTTATGAAAGACGGTAACCCATGGCCTGGGAGCAACATGGATGATCATCCAGGAATGATTCAGGTATGTCTAGGAAGTACTGGCTCACTGGACAAGGAAGGCAAAGAATTACCTCGGCTTGTGTATGTTTCCAGGGAAAAACGTCCTGGATATCAACACCACGGGAAAGCTGGTGCCATGAATGCTCTGGTTCGAGTTTCTGCTGTGCTTACCAATGCACCTTTTGCATTAAATCTGGATTGTGACCAATTCATCAATAATACCAAGGTTCTTAGGGAGTCCATGTGCTTTTTAATGGACCCCCAACTTGGAAAGAAGTTCTGTTACGTCCAATTTCCAAAAAGGTTCAATGGCATCGATTGCAATGACAGATATGCTAATCACAATACTGTGTTCTTTGATATCAACATGAAATGCCTTGATGGGATTCAAGGTCCTCTTTATGTTGGTACTGGAAGTGTGTTCAACAGGCAAGCATTATATGGCTTTGATCCACTTTCTGATAAAAGGCCAAAGATGAAGAGTTGCTGCTGGCCTTCATCCTGCAGCTGCTGTTCTAGTGACTCCGAGTCTTCATCTGATGACGACACTGATCAGGAACTTGTAAACTTTGATGACGAAGAGGAAGAGGAATTATCCTTCATGTCCATGAAAAGTTTAGAGAAACGATTTGGACAATCACCGGTTTTCATTGCTTCTGCTTTGATGGAAGATGGTGGACTTCCCAAAGGCACAAACACCCGAGTACTGATTAAGGAAGCAATTCATGTTATAAGCTGTGACTATGAAGAGAAAACTGAATGGGGAAAAGAGATTGGGTGGCTATATGGTTCAGTCACAGAAGACATTTTAACTGGGTTTAACATGCATTGTAGAGGATGGAAATCAGTGTACTGCATGCCAAAGAAAGCAGCTTTTAAGGGATCAGCTCCTATAAATCTATCAGATCGATTGCACCAAGTTCTGAAATGGGCTGCTGGTTCTACTGAGATTTTCTTTAGTGGCTATTGTCCTTTGTGGTATGGCTATAGTGGAAAACTGAAATGGCTACAGAGGTTGGCCTACATTAACTCCATCGTCTATCCATTTACTTCTATCCCCCTGCTGATCTACTGTACAATTCCTGCTGTCTGTCTTCTGACTGGAAAGTTCATCATCCCCACTGTAGGAAGAATTCTAAATGAGAGAACAACCACGGGATTGAAACTGGTTGAAAATTTGATCAGAATCAATCTGTCAAACTTTGCTAGCATTTGGTTAATGGCCTTATTTATCTCCATCATCTTAACTTGTGTGCTAGAGCTTCGTTGGAGTGGGGTTAGCATTCATGACTGGTGGCGCAATGAGCAATTCTGGGTCATTGGGGGTGTATCTTCACACCTTTTTGCCGTATTTCAAGGTCTTCTTAAAGTTGGAGGAGTAAACTCTAGCTTCACCGTGAGAGCAAAATCAGCACATGACACTTCATTTGGACAGTTCCATCTCTTCAAGTGGACTAGTCTTCTAATCCCACCAACAAGTCTTGTGATCTTAAATATGGTGGGAATTGTGGCTGGAATCTCTGATGCCATTAACAATGGCTATGACTCATGGGGACCTTTCTTTGGGAAGCTTTTCTTCTCCTTGTGGGTCATTGTGCACTTGTATCCTTTCCTCAAAGGACTAATGGGAAAGCAAAACAGAACCCCTACCATTGTAGTGCTCTGGTCAATACTTGTAGCCATAATTTTCTCAATGATTTGGGTGAGAATTGATATTTTCTTGCCCAAGCAGACAGGTCCAGCACTCAGACAGTGTGGGATAAGATGCTAA 2718 0.4246 MAMSTASATGSHSRNGFRFSDQENGDYNQHNYGQAFSVAGSEDFEGQKAFYSNEEKRKDKKSLMSNDHEDDNLLAEARQPLWRKVPIASSLINPYRIVIILRVVILVFFFHLRITTPVHDAIALWIISVVCEIWLALSWIVDQLPKWFPITRETYLERLSLRFEREGEPNLLAPVDIFVTTADPFKEPPIITANTVLSVLSVDYPVDKVSCYVSDDSASILLFDTLSETAEFARIWVPFCNKYNIETRAPEFYFSEKLDYLKDKVHPTFVKDRRAMKREYEEFKVKINILVAKAQKKPEEGWVMKDGNPWPGSNMDDHPGMIQVCLGSTGSLDKEGKELPRLVYVSREKRPGYQHHGKAGAMNALVRVSAVLTNAPFALNLDCDQFINNTKVLRESMCFLMDPQLGKKFCYVQFPKRFNGIDCNDRYANHNTVFFDINMKCLDGIQGPLYVGTGSVFNRQALYGFDPLSDKRPKMKSCCWPSSCSCCSSDSESSSDDDTDQELVNFDDEEEEELSFMSMKSLEKRFGQSPVFIASALMEDGGLPKGTNTRVLIKEAIHVISCDYEEKTEWGKEIGWLYGSVTEDILTGFNMHCRGWKSVYCMPKKAAFKGSAPINLSDRLHQVLKWAAGSTEIFFSGYCPLWYGYSGKLKWLQRLAYINSIVYPFTSIPLLIYCTIPAVCLLTGKFIIPTVGRILNERTTTGLKLVENLIRINLSNFASIWLMALFISIILTCVLELRWSGVSIHDWWRNEQFWVIGGVSSHLFAVFQGLLKVGGVNSSFTVRAKSAHDTSFGQFHLFKWTSLLIPPTSLVILNMVGIVAGISDAINNGYDSWGPFFGKLFFSLWVIVHLYPFLKGLMGKQNRTPTIVVLWSILVAIIFSMIWVRIDIFLPKQTGPALRQCGIRC 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01429 905 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 281 470 IPR029044 -
Vimu3g01429 905 FunFam Cellulose synthase 292 466 - -
Vimu3g01429 905 MobiDBLite consensus disorder prediction 1 31 - -
Vimu3g01429 905 Pfam Cellulose synthase 175 693 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vimu3g01429 905 Pfam Cellulose synthase 707 898 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vimu3g01429 905 SUPERFAMILY Nucleotide-diphospho-sugar transferases 186 683 IPR029044 -
Vimu3g01429 905 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 78 872 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01429 Vimu-Chr3 27085466 27089917 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01429 66 905 Cell Wall Biosynthesis AT5G17420 66.825 0.0 1205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01429 K10999 - gmx:100777278 1566.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01429 3 27085466 27089917 Vimu3g01429 3 27085466 27089917 ECH