LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu3g01429	ATGGCCATGAGTACTGCCTCAGCTACTGGTTCTCACTCCCGAAATGGATTCCGTTTCTCGGACCAGGAAAATGGAGACTACAATCAACACAACTATGGTCAAGCCTTCTCTGTGGCCGGAAGTGAGGATTTTGAAGGACAGAAAGCATTCTATAGCAATGAAGAGAAACGGAAAGATAAGAAAAGTTTAATGAGCAACGATCACGAAGACGACAATCTTTTGGCTGAGGCAAGGCAACCATTGTGGCGCAAGGTTCCAATAGCTTCAAGCCTAATCAACCCATATCGCATAGTCATAATCTTGCGTGTGGTTATCCTAGTTTTCTTCTTCCACTTGCGCATCACAACTCCAGTGCATGATGCAATTGCCTTATGGATAATCTCTGTAGTCTGTGAAATCTGGCTTGCATTATCTTGGATTGTTGACCAACTCCCCAAGTGGTTCCCTATTACTCGTGAAACTTACCTTGAACGTTTGTCCTTAAGGTTTGAGCGTGAAGGGGAGCCAAACCTTCTAGCCCCGGTTGATATCTTTGTAACCACTGCAGACCCTTTTAAGGAACCACCTATTATAACAGCAAACACGGTTTTATCAGTCTTGTCTGTTGATTACCCTGTTGATAAGGTTAGCTGCTATGTCTCAGATGACAGTGCTTCAATCCTTCTCTTTGATACCTTGTCAGAAACTGCCGAGTTTGCTAGAATATGGGTTCCTTTTTGTAACAAGTACAACATTGAGACAAGGGCACCTGAGTTTTATTTCTCTGAGAAACTTGATTACTTGAAAGATAAGGTGCATCCAACATTTGTTAAGGATCGCAGGGCTATGAAGAGAGAATACGAAGAATTCAAGGTGAAAATTAACATACTGGTTGCAAAGGCTCAGAAGAAACCAGAAGAAGGTTGGGTTATGAAAGACGGTAACCCATGGCCTGGGAGCAACATGGATGATCATCCAGGAATGATTCAGGTATGTCTAGGAAGTACTGGCTCACTGGACAAGGAAGGCAAAGAATTACCTCGGCTTGTGTATGTTTCCAGGGAAAAACGTCCTGGATATCAACACCACGGGAAAGCTGGTGCCATGAATGCTCTGGTTCGAGTTTCTGCTGTGCTTACCAATGCACCTTTTGCATTAAATCTGGATTGTGACCAATTCATCAATAATACCAAGGTTCTTAGGGAGTCCATGTGCTTTTTAATGGACCCCCAACTTGGAAAGAAGTTCTGTTACGTCCAATTTCCAAAAAGGTTCAATGGCATCGATTGCAATGACAGATATGCTAATCACAATACTGTGTTCTTTGATATCAACATGAAATGCCTTGATGGGATTCAAGGTCCTCTTTATGTTGGTACTGGAAGTGTGTTCAACAGGCAAGCATTATATGGCTTTGATCCACTTTCTGATAAAAGGCCAAAGATGAAGAGTTGCTGCTGGCCTTCATCCTGCAGCTGCTGTTCTAGTGACTCCGAGTCTTCATCTGATGACGACACTGATCAGGAACTTGTAAACTTTGATGACGAAGAGGAAGAGGAATTATCCTTCATGTCCATGAAAAGTTTAGAGAAACGATTTGGACAATCACCGGTTTTCATTGCTTCTGCTTTGATGGAAGATGGTGGACTTCCCAAAGGCACAAACACCCGAGTACTGATTAAGGAAGCAATTCATGTTATAAGCTGTGACTATGAAGAGAAAACTGAATGGGGAAAAGAGATTGGGTGGCTATATGGTTCAGTCACAGAAGACATTTTAACTGGGTTTAACATGCATTGTAGAGGATGGAAATCAGTGTACTGCATGCCAAAGAAAGCAGCTTTTAAGGGATCAGCTCCTATAAATCTATCAGATCGATTGCACCAAGTTCTGAAATGGGCTGCTGGTTCTACTGAGATTTTCTTTAGTGGCTATTGTCCTTTGTGGTATGGCTATAGTGGAAAACTGAAATGGCTACAGAGGTTGGCCTACATTAACTCCATCGTCTATCCATTTACTTCTATCCCCCTGCTGATCTACTGTACAATTCCTGCTGTCTGTCTTCTGACTGGAAAGTTCATCATCCCCACTGTAGGAAGAATTCTAAATGAGAGAACAACCACGGGATTGAAACTGGTTGAAAATTTGATCAGAATCAATCTGTCAAACTTTGCTAGCATTTGGTTAATGGCCTTATTTATCTCCATCATCTTAACTTGTGTGCTAGAGCTTCGTTGGAGTGGGGTTAGCATTCATGACTGGTGGCGCAATGAGCAATTCTGGGTCATTGGGGGTGTATCTTCACACCTTTTTGCCGTATTTCAAGGTCTTCTTAAAGTTGGAGGAGTAAACTCTAGCTTCACCGTGAGAGCAAAATCAGCACATGACACTTCATTTGGACAGTTCCATCTCTTCAAGTGGACTAGTCTTCTAATCCCACCAACAAGTCTTGTGATCTTAAATATGGTGGGAATTGTGGCTGGAATCTCTGATGCCATTAACAATGGCTATGACTCATGGGGACCTTTCTTTGGGAAGCTTTTCTTCTCCTTGTGGGTCATTGTGCACTTGTATCCTTTCCTCAAAGGACTAATGGGAAAGCAAAACAGAACCCCTACCATTGTAGTGCTCTGGTCAATACTTGTAGCCATAATTTTCTCAATGATTTGGGTGAGAATTGATATTTTCTTGCCCAAGCAGACAGGTCCAGCACTCAGACAGTGTGGGATAAGATGCTAA	2718	0.4246	MAMSTASATGSHSRNGFRFSDQENGDYNQHNYGQAFSVAGSEDFEGQKAFYSNEEKRKDKKSLMSNDHEDDNLLAEARQPLWRKVPIASSLINPYRIVIILRVVILVFFFHLRITTPVHDAIALWIISVVCEIWLALSWIVDQLPKWFPITRETYLERLSLRFEREGEPNLLAPVDIFVTTADPFKEPPIITANTVLSVLSVDYPVDKVSCYVSDDSASILLFDTLSETAEFARIWVPFCNKYNIETRAPEFYFSEKLDYLKDKVHPTFVKDRRAMKREYEEFKVKINILVAKAQKKPEEGWVMKDGNPWPGSNMDDHPGMIQVCLGSTGSLDKEGKELPRLVYVSREKRPGYQHHGKAGAMNALVRVSAVLTNAPFALNLDCDQFINNTKVLRESMCFLMDPQLGKKFCYVQFPKRFNGIDCNDRYANHNTVFFDINMKCLDGIQGPLYVGTGSVFNRQALYGFDPLSDKRPKMKSCCWPSSCSCCSSDSESSSDDDTDQELVNFDDEEEEELSFMSMKSLEKRFGQSPVFIASALMEDGGLPKGTNTRVLIKEAIHVISCDYEEKTEWGKEIGWLYGSVTEDILTGFNMHCRGWKSVYCMPKKAAFKGSAPINLSDRLHQVLKWAAGSTEIFFSGYCPLWYGYSGKLKWLQRLAYINSIVYPFTSIPLLIYCTIPAVCLLTGKFIIPTVGRILNERTTTGLKLVENLIRINLSNFASIWLMALFISIILTCVLELRWSGVSIHDWWRNEQFWVIGGVSSHLFAVFQGLLKVGGVNSSFTVRAKSAHDTSFGQFHLFKWTSLLIPPTSLVILNMVGIVAGISDAINNGYDSWGPFFGKLFFSLWVIVHLYPFLKGLMGKQNRTPTIVVLWSILVAIIFSMIWVRIDIFLPKQTGPALRQCGIRC	905

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu3g01429	905	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	281	470	IPR029044	-
	Vimu3g01429	905	FunFam	Cellulose synthase	292	466	-	-
	Vimu3g01429	905	MobiDBLite	consensus disorder prediction	1	31	-	-
	Vimu3g01429	905	Pfam	Cellulose synthase	175	693	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Vimu3g01429	905	Pfam	Cellulose synthase	707	898	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Vimu3g01429	905	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	186	683	IPR029044	-
	Vimu3g01429	905	PANTHER	X-BOX TRANSCRIPTION FACTOR-RELATED	78	872	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu3g01429	Vimu-Chr3	27085466	27089917	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu3g01429	66	905	Cell Wall Biosynthesis	AT5G17420	66.825	0.0	1205

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu3g01429	K10999		-	gmx:100777278	1566.21

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu3g01429	3	27085466	27089917	Vimu3g01429	3	27085466	27089917	ECH

Showing 1 to 1 of 1 entries