Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01425 ATGGCTACTCAAGGACAAGTCATTACCTGCAAAGCCGCGGTGGCCTGGGAACCAAACAAGCCATTGAGCATTGAGGACGTGCAGGTGGCTCCGCCGCAGAATGGAGAGGTTCGAATCAAAATTCTCTACACTGCTCTGTGTCACACCGATGCTTACACATGGAGCGGCAAGGATCCAGAAGGTCTTTTTCCATGTATACTGGGTCATGAGGCTGCAGGGATTGTGGAAAGTGTTGGAGAAGGTGTTAGTGAAGTTGAGGCTGGTGATCATGTGATACCTTGTTACCAGGCTGAGTGTGGAGAGTGCAAGTTTTGTAAATCTGGGAAAACGAATCTGTGTGGGAAAGTTAGAGCTGCAACTGGAGTAGGAGTGATGTTGAGCGATCGCAAGAGTCGCTTCTCTATTAACGGAAAACCACTCTATCATTTTATGGGAACCTCCACATTTAGTCAATACACTGTTGTTCATGATGTTAGTGTCGCTAAGATTCATCCCCAAGCTCCTTTGGAGAAAGTTTGTCTTCTTGGATGTGGTGTTCCAACTGGTCTTGGAGCTGTCTGGAACACTGCAAAGGTGGAAAAGGGGTCAATTGTTGCTATTTTTGGCCTTGGAACTGTTGGGCTTGCTGTAGCAGAGGGTGCAAAAGCTGTTGGTGCATCAAGGATTATTGGCATAGATATTGATAGCAATAAGTTTGAAAGAGCAAAAAACTTTGGAGTCACCGAATTTCTTAATCCAAAAGAACATGAGAAACCAATTCAGCAGGTCATAGTTGATCTCACAGATGGTGGAGTTGATTACAGTTTTGAGTGTATTGGAAATGTCACTGTGATGAGAGCTGCTTTGGAATGCTGCCATAAGGGTTGGGGGACATCAGTTATTGTGGGGGTTGCAGCATCAGGTCAGGAAATATGTACTCGACCTTTCCAGCTGGTGACTGGGCGTGTATGGAAGGGAACAGCATTTGGTGGCTTCAAGAGCCGATCACAAGTGCCTTGGCTTGTAGAAAAGTACATGAAGAAGGAAATCAAGGTTGATGAGTACGTCACCCACAGTTTGACTCTTGCGGAGATCAATAAGGCATTTGACCTCATGCATGAAGGAGGATGTCTCCGTTGTGTGCTTGCAATGCATGAGTGA 1140 0.4588 MATQGQVITCKAAVAWEPNKPLSIEDVQVAPPQNGEVRIKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVSEVEAGDHVIPCYQAECGECKFCKSGKTNLCGKVRAATGVGVMLSDRKSRFSINGKPLYHFMGTSTFSQYTVVHDVSVAKIHPQAPLEKVCLLGCGVPTGLGAVWNTAKVEKGSIVAIFGLGTVGLAVAEGAKAVGASRIIGIDIDSNKFERAKNFGVTEFLNPKEHEKPIQQVIVDLTDGGVDYSFECIGNVTVMRAALECCHKGWGTSVIVGVAASGQEICTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYMKKEIKVDEYVTHSLTLAEINKAFDLMHEGGCLRCVLAMHE 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01425 379 PANTHER ALCOHOL DEHYDROGENASE 5 375 - -
Vimu3g01425 379 Pfam Zinc-binding dehydrogenase 206 328 IPR013149 -
Vimu3g01425 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 341 IPR036291 -
Vimu3g01425 379 SUPERFAMILY GroES-like 3 197 IPR011032 -
Vimu3g01425 379 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Vimu3g01425 379 Gene3D - 182 320 - -
Vimu3g01425 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 13 201 - -
Vimu3g01425 379 NCBIfam S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 377 IPR014183 GO:0006069|GO:0008270|GO:0051903
Vimu3g01425 379 CDD alcohol_DH_class_III 8 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Vimu3g01425 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 182 320 - -
Vimu3g01425 379 SUPERFAMILY GroES-like 326 375 IPR011032 -
Vimu3g01425 379 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Vimu3g01425 379 Gene3D - 13 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01425 Vimu-Chr3 27006415 27011075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01425 10 331 Monolignol Biosynthesis Gene Families AT1G72680 26.300 2.18e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01425 K00121 - gmx:100793008 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01425 3 27006415 27011075 Vimu3g01425 3 27006415 27011075 ECH
Vimu6g02648 6 23153884 23157449 Vimu3g01425 3 27006415 27011075 PCT