Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01417 ATGTGTGATCCAGGGCTTGCAGCTGAACATCAAGGTGTGTCAGAACATGTTATCAAAAGGGCATATTCAGCAACAGAGGAGAGTTTTCTTTCTCTTGTGAAGAAACAGTGGCTGAGTAAGCCTCAGATTGCATCTACGGGAACTTGTTGCTTGGTGGGGGTAATTTGCAATGGAATGATATATATTGCAAATTCTGGAGACTCCCGGGTGGTGTTAGGAAGAGTAGAGAGAGCAACAAGGGAAACAGAAGCTATTCAATTATCTACAGAACACAATGTTAACCAGGAAACAGTGAGAGATGAACTTCGCTCAAAGCACCCTTTTGATTCACAAATCGTGGTATTGAGACAAAACGTTTGGCGTGTGAAAGGCCTCATACAGGTTTCACGATCCATAGGGGACGCGTATCTGAAGAAAGCAGAATTCAACAGGGATCCACTACCAGCAAAATATAGGCTCGCTGAAACATTCTTCAGGCCAATTCTTAGTTGTGAGCCATCAACATCATCCCACACACTCCATCCAGATGATCAATTTCTCATATTTGCTTCTGATGGTTTATGGGAGCATCTTACAAACCAAGAGGCTGTTAACATAGTCAACAACAACCCACCAAACGGAATTGCCAGAAGACTTGTGAAAGCTGCACTTAGAGAAGCTGCTAAGAAGTGTGAAATGAGGCTTTCTGACCTCCAAAAGATTGAGCAAGGGATGAGGAGGCACATCCATGATGACATTACAGTTATTGTGGTATTTCTTAACTCCAGAACTGAGAATACCTCTCTCTGTGGTTCTCCTCTTTCAATCAAGGGAGGTGCCTCTGCCAATTCCTAG 834 0.4341 MCDPGLAAEHQGVSEHVIKRAYSATEESFLSLVKKQWLSKPQIASTGTCCLVGVICNGMIYIANSGDSRVVLGRVERATRETEAIQLSTEHNVNQETVRDELRSKHPFDSQIVVLRQNVWRVKGLIQVSRSIGDAYLKKAEFNRDPLPAKYRLAETFFRPILSCEPSTSSHTLHPDDQFLIFASDGLWEHLTNQEAVNIVNNNPPNGIARRLVKAALREAAKKCEMRLSDLQKIEQGMRRHIHDDITVIVVFLNSRTENTSLCGSPLSIKGGASANS 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01417 277 Gene3D - 4 261 IPR036457 -
Vimu3g01417 277 CDD PP2Cc 17 253 IPR001932 -
Vimu3g01417 277 PANTHER PROTEIN PHOSPHATASE 18 251 IPR015655 GO:0004722|GO:0006470
Vimu3g01417 277 Coils Coil 214 234 - -
Vimu3g01417 277 SMART PP2C_4 11 251 IPR001932 -
Vimu3g01417 277 Pfam Protein phosphatase 2C 24 222 IPR001932 -
Vimu3g01417 277 ProSiteProfiles PPM-type phosphatase domain profile. 1 253 IPR001932 -
Vimu3g01417 277 SUPERFAMILY PP2C-like 13 255 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01417 Vimu-Chr3 26859283 26861847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01417 6 273 PP2C-type Phosphatase Gene Family AT3G12620 66.543 2.98e-131 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01417 K01102 - gmx:100819870 517.694