Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01415 ATGGAAGAAACATCAACATCTATCATCATGGCTGCACTCTCCACCCTCACCCCTTCCCAATTCTCAGATCTCACCCACTCCATTCTATCAACTACCCTTCATCACCATCGCCGTCTCGCCTTCCTCCTTTCTTCCCCGACGCTCTTCTCTCTAACCCTCCACCACCTCCACAACCTCTCTCTCCCCCAGAAGACGCTTCTCATCGCCCGCCACCTCCTCTCCTTTCTCCACCTCCTCACTGCCACCTCCCCGCCGCTGTCCACAGCCACGAGGCAGCGCGACCTCGACGCTGCACTTCTCCTCCTCCTCCTTTGCGAAACGCACAACCACAATCCACATGCCCTCGAGGCACCCTTTTCCCAATGGAGGGTCAACCTCAGCACCATCTTCACCGATTCATTGTTGACTCTTTCCTTTGCACCCTTTGGGTCAAGCACGGGCTCGACGGTGCTGATTCCCTTCGTTGAGACCGTGACGCGGTGCTGGAGACTCGTCGGTGCACTAGAATGCGGCGGAGGAAAGGAATCGGGGGAGGTGGCTGCGTCGGCTACGGCGGTGGTAGCGCTGCCATCGGTGGAGGTGAGGGCGGGTGGGATAGAGTGTGCGATATGCAGAGAGGAGATGACAATAGGGAGGGACGTGTGCGAGTTGCCATGTCAGCACTTGTTTCATTGGGTGTGTATCTTACCGTGGCTTGGGAAGAGGAACACGTGTCCTTGCTGCAGGTTTCGGTTACCGTCTGATGATGTCGTAGGAGAGATCGAACGGCTGTGGGAAATCTTAGTTAAAACGGCTGCAAAAGATTCGTAG 810 0.563 MEETSTSIIMAALSTLTPSQFSDLTHSILSTTLHHHRRLAFLLSSPTLFSLTLHHLHNLSLPQKTLLIARHLLSFLHLLTATSPPLSTATRQRDLDAALLLLLLCETHNHNPHALEAPFSQWRVNLSTIFTDSLLTLSFAPFGSSTGSTVLIPFVETVTRCWRLVGALECGGGKESGEVAASATAVVALPSVEVRAGGIECAICREEMTIGRDVCELPCQHLFHWVCILPWLGKRNTCPCCRFRLPSDDVVGEIERLWEILVKTAAKDS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01415 269 Pfam Ring finger domain 200 242 IPR001841 -
Vimu3g01415 269 CDD RING-H2_PA-TM-RING 200 242 - -
Vimu3g01415 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 253 IPR013083 -
Vimu3g01415 269 ProSiteProfiles Zinc finger RING-type profile. 201 242 IPR001841 -
Vimu3g01415 269 SMART ring_2 201 241 IPR001841 -
Vimu3g01415 269 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 139 246 - -
Vimu3g01415 269 SUPERFAMILY RING/U-box 197 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01415 Vimu-Chr3 26796402 26798123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01415 1 265 C3H Transcription Factor Family AT5G02750 50.000 6.76e-81 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01415 K11982 - gmx:100810879 407.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01415 3 26796402 26798123 Vimu3g01415 3 26796402 26798123 ECH