Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01406 ATGTCACCGAAATCTGAATCAAAAAGAAGATCCCCTGGAGTCATCGCCAGATTGATGGGTCTTGATGGACTGCCATTTCAACAGCCTATTAATAAGCAGCATAAGGGTTTGTCCGAAAACCACAAGAAGACTCCACAATTGCAGAAAACACGCGGCAAAGGAGTGCCATATGACTGTGGATCATCTAGGAGAGGCTTAAGGGATCAGCAAGAATTTAAGGATGTATTTGAGGTTTCTGAGATTCCAAAGGTAGAGAGCAGTAGATATCCGTCGCCAGGGTGTGTAAACTTGAAGACCAATGATGCTGAAATGTCATTCATTGAACAGAAGTTCATGGATGCCAAACGCCTTGCAACTCATCAAGATTTACAGTCTTCAAAGGACTTCCGAGACACACTTGAGGTTTTGGATTCTAACAAGGATCTTCTGCTGAAATACTTTAAGCGGCCAGATTCTTTGTTTAAAAAGCATCTAAATGATCTTCAAGCTGTTCCTGTTCAATCACATTATAGACATGCAGAAACTATGGATATTGAGAAGTATGAAGATGACTTAAGTTGGAGGTCAGATAGGGAGAAAACACGGTTGAACTACAATAGATCTCATGAAAAGCATCTTGATGGTTATCCTTATCATTTTGACAAAAGACATGTGATGCATAGTTCACCAAAATCATCAAAGCTTCAATTTCAGGGCATACATGAACAAGACGCAGTCCCCACAAAGATTGTCCTCCTGAAACCCAATCTTGGAAAAGTGCAGAATGGTACCAGAGTTGCATCATCACCTTGTTCTCATAATTTTCTGTCGGGGCATGAAGGAGACAGTGAACTGTGTCAAGTGACAAATTTGCCTGAAAGTGCAAGTTCTTGGAGGCAAGATTCTTTTGAATCTAGAGAAATTGCAAAGGAAATCACTAGGCAAATGAGAAATAGTCTTAACAATAGCGGCATGATGCTTTCAACTTCTAGAATTGCGGGATATGCTGGGGATGATAGTTCATGTAGTATTTCTGGTAATGAATCTCCTGACATATCTGGGGAAATAACTGCAACTTTGGGAAATTCATTCGACTTAAACAACCGTAGCAGGCGATCATCCCGTTCTGGTGAATCTTCTGTCAGTAGAGAGGCGAAGAAGAGATTGTCAGAGAGGTGGAAAATGACACACAAGTCTCAAGAGGTGCAGGGAATCAGCAGGAGCAGCACGCTGGCAGAAATGCTTTCTATCCCTGACAAAGATTTGAAGGCAGCAAATTTTGTTGGCACGGCTACTGGGGAAGGTTTCCATGATAAGTTTACTCCCAACAGTGAACCTGCTAAGTGGGTTGAACCATTGGGTATCAGCAGCAGGGATGGTTGGAAGGACGGCTGCATTGGTAGTTTGTCAAGATCACAATCCCTTCCTTCTTCCTCCACATCCTTTGGAAGTCCTAAAACATTCTTGCGCACTGAAGCACTTTGTGCTGATCGATATATGGTGCCGAAGGAAGGCCATAAACGTGAGAGGAGAAGAGCAGCAAAGAGTCTTGATCATAGACATGGTGTAAATAACAGAAGCCCAAGATCCGGTCACAAGAAGTCTTGGTCTTTGCATTCGTCCAAGCTAGAAGTAGATGAGTTTTGTGCTGACTTACATACAGTTCAAAATAAAATGAATATCATTCTTGAAGATTCGGCCAAGCTTGAAGTTCCAAGTGCAGTTGCTGTCGATGACACGGAGGTGACAAATGGAAGCATAGTTGAGTCTTCTGAACCTTTGAATAAGGTGCTTCCTGAATTATCTTCTCATGTCGTGATTGAAGGCCATGGTGGTGCGGTTGGCAACAATTCAATACAGCAGGATCTATCAGCTGCGTCGCCTGATGGAAGTTCAGTCATCCATGAACCACCTGTTCCTGGACTTGAACCTTCTTGCTGTAAAGATGCTGATCAACCCAGCCCTGTCTCCATCCTAGAACCTGCTTTTACAGATGATCTGTCTTCTTGTTCTGAATGTTTTGAAAGTCTGAGTGCTGATCTACAAGGGCTACGAATGCAACTCCAGTTGCTGAAGTTGGAATCTGATGATTATGCGGAGGGACCCATGACAGTAAGTGATGAAGATGGTGAGGAAGTATCTGTGGGAATGTCAGCAGCAGACAAAGTATTATGTAGAACAACTGAAGATAGCTGGGAATGTTCTTACATTATGGATGTCTTGTCCGAATCTGGCATAGATGGAGTTCAGCTTGATACAATTTTAGAAGTTTGGCATTCCCTGGAATGCCCTGTGAGTCTTTCGGTGTTTGATGAACTTGAAAAAAGGTATAATGACGGAACAACTTGTTCAAGGTCTCAAAGGAGATTGCTTTTTGACCATATAAATATAGGAATTCTCAAGATCAGTGAGCACTTCTCTTTCTCTAGATCAGCAATAAAAAATGCCATTGGTTTTAATTTGACCAAAAAGGGGTTCCGAGATGGCCTTCTGAGAATGGTAGTGAACGAAGCAAAAGTAAATGATGGTGGCCAGGGGAATGTAGTGGTTGGGGAATCTGAGTGGATGGACCTTAAAGTTTACACTGATGCAATAGCCAAGGAAGTTGAGAGGTCATTGTTAGATGATTTAGTGGCAGAGGTAATCGGTACCTAG 2634 0.4244 MSPKSESKRRSPGVIARLMGLDGLPFQQPINKQHKGLSENHKKTPQLQKTRGKGVPYDCGSSRRGLRDQQEFKDVFEVSEIPKVESSRYPSPGCVNLKTNDAEMSFIEQKFMDAKRLATHQDLQSSKDFRDTLEVLDSNKDLLLKYFKRPDSLFKKHLNDLQAVPVQSHYRHAETMDIEKYEDDLSWRSDREKTRLNYNRSHEKHLDGYPYHFDKRHVMHSSPKSSKLQFQGIHEQDAVPTKIVLLKPNLGKVQNGTRVASSPCSHNFLSGHEGDSELCQVTNLPESASSWRQDSFESREIAKEITRQMRNSLNNSGMMLSTSRIAGYAGDDSSCSISGNESPDISGEITATLGNSFDLNNRSRRSSRSGESSVSREAKKRLSERWKMTHKSQEVQGISRSSTLAEMLSIPDKDLKAANFVGTATGEGFHDKFTPNSEPAKWVEPLGISSRDGWKDGCIGSLSRSQSLPSSSTSFGSPKTFLRTEALCADRYMVPKEGHKRERRRAAKSLDHRHGVNNRSPRSGHKKSWSLHSSKLEVDEFCADLHTVQNKMNIILEDSAKLEVPSAVAVDDTEVTNGSIVESSEPLNKVLPELSSHVVIEGHGGAVGNNSIQQDLSAASPDGSSVIHEPPVPGLEPSCCKDADQPSPVSILEPAFTDDLSSCSECFESLSADLQGLRMQLQLLKLESDDYAEGPMTVSDEDGEEVSVGMSAADKVLCRTTEDSWECSYIMDVLSESGIDGVQLDTILEVWHSLECPVSLSVFDELEKRYNDGTTCSRSQRRLLFDHINIGILKISEHFSFSRSAIKNAIGFNLTKKGFRDGLLRMVVNEAKVNDGGQGNVVVGESEWMDLKVYTDAIAKEVERSLLDDLVAEVIGT 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01406 877 Pfam DUF761-associated sequence motif 6 25 IPR032795 -
Vimu3g01406 877 Pfam Domain of unknown function (DUF4378) 727 873 IPR025486 -
Vimu3g01406 877 Pfam Protein of unknown function (DUF3741) 108 152 IPR022212 -
Vimu3g01406 877 Coils Coil 667 687 - -
Vimu3g01406 877 MobiDBLite consensus disorder prediction 369 391 - -
Vimu3g01406 877 PANTHER AFADIN 1 875 - -
Vimu3g01406 877 MobiDBLite consensus disorder prediction 25 63 - -
Vimu3g01406 877 MobiDBLite consensus disorder prediction 497 529 - -
Vimu3g01406 877 MobiDBLite consensus disorder prediction 356 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01406 Vimu-Chr3 26696550 26701854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01406 1 875 TRM (TON1 Recruiting Motif) Superfamily AT3G53540 35.216 1.17e-123 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01406 - - ccaj:109788117 1233.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01406 3 26696550 26701854 Vimu3g01406 3 26696550 26701854 ECH
Vimu6g02599 6 22584301 22593128 Vimu3g01406 3 26696550 26701854 PCT