Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01403 ATGGGTAAGTCAAAGAAATTCGTTGTAAGAAGGATTCAAATTCGTGCCATTTCTTTTCACGTCTGTTCTGAGATAAAGGTGTACGAGCTGAGGAACAAGACGAAGGCGGAGCTGTTGAACCAATTGAAGGATCTGAAGGCGGAGCTCGCTCTGCTTCGAGTGGCTAAGGTCACTGGCGGCGCCCCTAACAAGCTCTCCAAAATCAAGGTAGTGAGGCTTTCGATAGCGCAGGTGTTGACGGTTATTTCTCAAAAGCAGAAGGCGGCGCTCAGAGAGGCTTACAAGAATAAGAAGTATTTGCCCCTTGACCTCCGTCCCAAGAAGACCCGCGCCATTCGCAGACGCCTTACCAAACACCAGGCATCATTGAAGACAGAACGGGAGAAGAAGAAGGAGCTTTACTTTCCACTAAGAAAGTATGCCATCAAAGTTTAA 435 0.4782 MGKSKKFVVRRIQIRAISFHVCSEIKVYELRNKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKELYFPLRKYAIKV 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01403 144 Gene3D - 22 98 IPR036049 GO:0003735|GO:0005840|GO:0006412
Vimu3g01403 144 Coils Coil 28 55 - -
Vimu3g01403 144 FunFam 60S ribosomal protein L35 99 144 - -
Vimu3g01403 144 CDD Ribosomal_L29_HIP 29 85 - -
Vimu3g01403 144 Pfam Ribosomal L29 protein 29 85 IPR001854 GO:0003735|GO:0005840|GO:0006412
Vimu3g01403 144 Hamap 50S ribosomal protein L29 [rpmC]. 25 85 IPR001854 GO:0003735|GO:0005840|GO:0006412
Vimu3g01403 144 SUPERFAMILY Ribosomal protein L29 (L29p) 25 86 IPR036049 GO:0003735|GO:0005840|GO:0006412
Vimu3g01403 144 NCBIfam 50S ribosomal protein L29 29 85 IPR001854 GO:0003735|GO:0005840|GO:0006412
Vimu3g01403 144 Gene3D - 99 144 - -
Vimu3g01403 144 PANTHER 60S RIBOSOMAL PROTEIN L35 24 144 IPR045059 GO:0000463|GO:0022625
Vimu3g01403 144 FunFam 60S ribosomal protein L35 22 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01403 Vimu-Chr3 26571723 26572739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01403 22 144 Cytoplasmic Ribosomal Protein Gene Family AT3G09500 86.992 4.45e-71 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01403 K02918 - gmx:100789845 226.483