Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01401 ATGGGTAACGCCCATGGACACCGCCATCGCAAACGCCCCAACTTCGTTCCTCCGCCCCATATATACGATCACCCTCCACCATTCCCAACCCCACCACCACCCATAGCTAATTCCAACATGCTCTCTCTTCCTTACACCCACGTCGACACCACCCTCCGCGCCCTCGCTGCCCAAGCCGAGGGCTTCGGCCGCTTCGCTGTTGGTGGCCTCCACGGCCCCCTTCACCGCGTCACATCGCTCGCAGATGATGGACCGGGGTCGCTGCGTGAGGCGTGTCGCGGAAAAGAACCATTGTGGATTGTGTTTGAAGTGTCCGGCACCATTAATCTCTCCTCGTACCTGAACGTGTCGTCTCACAAGACCATCGATGGTCGTGGCCAGAGGATTAAACTTACCGGACATGGGTTGCGCCTGAAGGAATGCGAACACGTCATAATCTGCAATTTGGAGTTCGAAGGAGGCAAAGGGCATGATGTTGACGCCATTCAGATCAAACCTAAATCCAAACACATATGGATTGATCGTTGCTCGCTCGCTGATTATGATGACGGACTTATAGACATCACACGTGAAAGCACAGACATTACTATCTCAAGGTGTCACTTCTCTCAGCATGATAAAACCATGCTTATTGGGGCTGATCCATCGCATGTTAACGATAGGTGCATGAGGGTCACTATACACCATTGTTTTTTCAATGGGACGCGACAGAGGCACCCTCGTGTTAGGTTTGCGAAAGTGCATCTCTATAATAATTATATCAGAAACTGGGGCATATATGCTGTGTGTGCTGGTGTGGAAGCCCAGATATTCTCGCAGCATAATATCTATGAAGCCGGACAGAAGAAGGTGGCCTTTAAGTACCTTACCGAGAAGGCAGGAGACAAGGAAGTGGGAACAAGTGGCTACATAAGGTCTGAGGGAGACTTGTTCTTAAAGGGTGCTGAACCAGGGTTAATGACCGAGAATGGAGGATGCAACATGTTTCACCCCAGTGAATACTATCCCTCATGGACAGTGGAAGCTCCCACAGAGGATCTTAAACACATTCTTCATCACTGCACTGGATGGCAATCTGTTGCTAGGCCAGCAGATCAAGCACTATGA 1107 0.505 MGNAHGHRHRKRPNFVPPPHIYDHPPPFPTPPPPIANSNMLSLPYTHVDTTLRALAAQAEGFGRFAVGGLHGPLHRVTSLADDGPGSLREACRGKEPLWIVFEVSGTINLSSYLNVSSHKTIDGRGQRIKLTGHGLRLKECEHVIICNLEFEGGKGHDVDAIQIKPKSKHIWIDRCSLADYDDGLIDITRESTDITISRCHFSQHDKTMLIGADPSHVNDRCMRVTIHHCFFNGTRQRHPRVRFAKVHLYNNYIRNWGIYAVCAGVEAQIFSQHNIYEAGQKKVAFKYLTEKAGDKEVGTSGYIRSEGDLFLKGAEPGLMTENGGCNMFHPSEYYPSWTVEAPTEDLKHILHHCTGWQSVARPADQAL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01401 368 PANTHER PECTATE LYASE 18-RELATED 49 316 IPR045032 GO:0030570
Vimu3g01401 368 Pfam Pectate lyase 113 277 IPR002022 -
Vimu3g01401 368 MobiDBLite consensus disorder prediction 18 35 - -
Vimu3g01401 368 MobiDBLite consensus disorder prediction 1 15 - -
Vimu3g01401 368 PRINTS Pollen allergen Amb family signature 260 279 IPR018082 -
Vimu3g01401 368 PRINTS Pollen allergen Amb family signature 58 75 IPR018082 -
Vimu3g01401 368 PRINTS Pollen allergen Amb family signature 113 129 IPR018082 -
Vimu3g01401 368 Gene3D - 44 354 IPR012334 -
Vimu3g01401 368 SUPERFAMILY Pectin lyase-like 58 360 IPR011050 -
Vimu3g01401 368 SMART amb_all 70 283 IPR002022 -
Vimu3g01401 368 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01401 Vimu-Chr3 26496946 26499756 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01401 80 368 Polysaccharide Lyase AT3G55140 75.779 5.99e-170 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01401 K01728 - gmx:100814368 650.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01401 3 26496946 26499756 Vimu3g01401 3 26496946 26499756 ECH