Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01384 ATGGTAGCCGTTCTGAAGAGGCAGAGAGAAAAGGAATCACAGGAGGAGTTCCAGTGCAAGACGTGTAACCGCAAATTCTCGTCCTTCCAAGCGCTGGGAGGTCACCGGGCCAGCCACAAGAAGCCCAAGTTGGAGGGAGAAGAAGGCAAGGATCTTCTGAGTCTAAGCCGGAAGCCCAAAACGCACGATTGTTCCATTTGCGGGCAGGGATTCTCGTTGGGCCAGGCCCTGGGAGGGCACATGAGAAAACACAGGGGAGGCACGAACGAAGGGTTTTCTTCAGTTATTGCGGAAGCACCGCTTCTGAAACGTTCAAATAGCAGCAAGAGGGTGATGTGCTTGGAGTTGGATCTCAACCTAACGCCGTTGGAAAATGACTTGAAGTTGTTGTTCGGAAACAAGGCTCCTACGGTGCATCTTTCCTTGTAG 429 0.5221 MVAVLKRQREKESQEEFQCKTCNRKFSSFQALGGHRASHKKPKLEGEEGKDLLSLSRKPKTHDCSICGQGFSLGQALGGHMRKHRGGTNEGFSSVIAEAPLLKRSNSSKRVMCLELDLNLTPLENDLKLLFGNKAPTVHLSL 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01384 142 Pfam C2H2-type zinc finger 17 42 - -
Vimu3g01384 142 Pfam C2H2-type zinc finger 62 85 - -
Vimu3g01384 142 ProSiteProfiles Zinc finger C2H2 type domain profile. 17 44 IPR013087 -
Vimu3g01384 142 PANTHER ZINC FINGER PROTEIN ZAT5 9 126 - -
Vimu3g01384 142 SUPERFAMILY beta-beta-alpha zinc fingers 17 84 IPR036236 -
Vimu3g01384 142 Gene3D Classic Zinc Finger 50 113 - -
Vimu3g01384 142 SMART c2h2final6 17 39 IPR013087 -
Vimu3g01384 142 SMART c2h2final6 62 84 IPR013087 -
Vimu3g01384 142 Gene3D Classic Zinc Finger 12 37 - -
Vimu3g01384 142 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Vimu3g01384 142 ProSitePatterns Zinc finger C2H2 type domain signature. 19 39 IPR013087 -
Vimu3g01384 142 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 89 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01384 Vimu-Chr3 26084952 26086081 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01384 5 132 C2H2 Transcription Factor Family AT2G37430 56.716 8.46e-44 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu3g01384 zf-C2H2_6 6.2e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01384 - - vra:106771374 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02606 6 22671809 22672321 Vimu3g01384 3 26084952 26086081 PCT