Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01380 ATGTCGTTCCACAATCAAGCATTTTGGTTGGGAAAGGGTCCTGAATGTTTGAATGATGGTGACATGGCAAATGACAATTCTTCTAGAATTGATTCCAAGCGTGCTTGTTCATGGTTCATGGATGACCCTGATGTGGATCTGCTTCCCAATAAGAAACAAGCAGTAGAAGCTCCAAGCAATTTGTTATCTGGAATTCTCAACTCGAATGTTCCTTCCTGGGGAAATTCCTCAGGATTTCATTCCTTAAATGGCCATTTTGCCGAACAAGTATTTGCCCCAGATGCTGTAAATATGCCTTTTGAAGATGCCAATACTCCCTCGGTTAGCATAGATGACAAGCTGACTGTGGAAAGAAAGGATAATATGGACCCCTTTGGGAGTGGATCCTCGTTTGGTTTATCCATATCAACTGCATTAGAAGATCCTCGTTTAGTTTTTAACTATGATGGAATTAGAAAAGTCAGAGTAAACGAGGTGAAGGGATCCGAGAATGTCATGTCTGTTACTGCAAACAGTCCCTATGATAGAGGAGTCAGTGACCATTTGTCAAATCCTTGTCTATACAAGGCTGGTGATAATTCCATATCAACAAATCTCAACTATAACAAAGGAGCAGCCAATATGATAGGAATGGATGGTTCCTATGACAGGACTGATAACAATTTCATGTCAATGGGTCAATCCTATGACAAGGGAAATGACAACTTATCTGTACATCCAACATTCAATGCGATTTCTAATACGATATCTATGGATGATAGAAATCTAATATCTATTGCTCAAGCTTACAATAAGGCTCATGACAATTCTATGTTAACCAATCAGCTATACAATAAGGTCGACAATGGCACTATGTCATCTCATTACAACTACCACAAGGAGGGTAATGATGTGCCATTTGTTCCACGATCCTATGATAAAGGAGAGAGCACTATCATATGTTTCGGTAGCCGTGAGGATGACACAACTCCCTCAGATTTTTTCATTTCTGACTATGAACTGTTGATGTGTCAAGCACTTTCACACAAGTCAGAAGCTGTGAAAGAGAAAGAGTTGGTTGCATGTAGTTCTAATTTACTTCCAAGTACAACACAGACATCTGCACCTGCAACTGAAAATATTCTCAAGACAAAAGAGGAGATAAAAGTGTCTAAAAGGGCTCTTTCAAACAACTTCCCTTCAAATGTCAGAAGTTTGCTATCCACCGGTATGCTGGATGGTCTCTCAGTAAAGTATAAGGCGTGGTCACGGGAGAAGGAACTTCGAGGTGTTATAAAAGGTGCTGGGTATCTGTGCAGTTGTCACTCATGTAATTTTTCCAAGGTTATTAATGCATATGAATTTGAGCGACATGCTGGTTGCAAGACAAAACACCCCAATAATCACATTTACTTTGATAATGGGAAAACTATTTATGGGGTTGTACAAGAGCTGAGGAGCACTCCAAAGAGCATGCTGTTTGAAGTTATTCAGACTGTAACTGGTTCACCTATCAATCAGAAATCCTTCTGCATTTGGAAAGAATCATTTTTGGCTGGAGCAGGGAACTCCAGCACATATGTGCAAAGCAAGTGA 1575 0.4 MSFHNQAFWLGKGPECLNDGDMANDNSSRIDSKRACSWFMDDPDVDLLPNKKQAVEAPSNLLSGILNSNVPSWGNSSGFHSLNGHFAEQVFAPDAVNMPFEDANTPSVSIDDKLTVERKDNMDPFGSGSSFGLSISTALEDPRLVFNYDGIRKVRVNEVKGSENVMSVTANSPYDRGVSDHLSNPCLYKAGDNSISTNLNYNKGAANMIGMDGSYDRTDNNFMSMGQSYDKGNDNLSVHPTFNAISNTISMDDRNLISIAQAYNKAHDNSMLTNQLYNKVDNGTMSSHYNYHKEGNDVPFVPRSYDKGESTIICFGSREDDTTPSDFFISDYELLMCQALSHKSEAVKEKELVACSSNLLPSTTQTSAPATENILKTKEEIKVSKRALSNNFPSNVRSLLSTGMLDGLSVKYKAWSREKELRGVIKGAGYLCSCHSCNFSKVINAYEFERHAGCKTKHPNNHIYFDNGKTIYGVVQELRSTPKSMLFEVIQTVTGSPINQKSFCIWKESFLAGAGNSSTYVQSK 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01380 524 PANTHER AUTOIMMUNE REGULATOR 11 474 - -
Vimu3g01380 524 Pfam Tify domain binding domain 423 478 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01380 Vimu-Chr3 25964851 25967489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01380 373 510 PHD Transcription Factor Family AT3G53680 53.623 2.09e-42 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01380 - - gmx:100794765 811.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01380 3 25964851 25967489 Vimu3g01380 3 25964851 25967489 ECH
Vimu3g01380 3 25964851 25967489 Vimu6g01227 6 12381363 12383385 ECH