Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01379 ATGGAGAACCAGCAGAAGCAAAATTGGTTCGAAAAGGCAAAGCCATTCGCAGCAGTGGTATCAATGCAGTTTGGATACGCAGTCATGGATGTTCTATCCAAAGCTGCACTGAACAAAGGGATGAGCAATTATGTGTTCGTCGTTTATCGCCAAGCAGTTGCATTCCTTGTCATGGCTCCTTTGGCATGGTTTTTTGAGAGAAGGAAAGCAAAGCCAAAGATGACACTCTCAATTTTCATCAAGATTTTGGTGCTGAGCTTGATAGAGCCAGTTATTGACCAGAATCTCTATTTTTTGGGGATGAAGTACACAACCGCAACCTTTGCCGTTACGATCACCAATATGCTTCCTGCTATCACCTTTATCTTTGCTTGGATTCTTAGGCTTGAGCAAGTAAATATAAAAAGTATACGAAGCCAAGCGAAGGTGGTGGGAACTGTAGCAACTGTTTCGGGTGCCATGATCATGACACTGATTAAAGGGCCAGTGCTTTTTGGGTCACACGGAGGCAATGATCAATCCAAGCATAATGGCACAAGTACTCAGCATACAATCATAGGGTTCATAATGATGACTATTGGATGCTTTTGCTGGGCTTCTTTCGTGATCTTACAGGCTATTACTCTGAAAACCTACCCTGCTGCACTCTCTCTTTCTGCGTGGATATGCTTAATGGCCACAATTGAAGGTGCTGCAGTGGCTTTGGTCATGGAAAGGGGCAACCCTTCAGTTTGGTCCATAAAATTTGATATGAGGTTGCTCTGTGCTGTTTATTCTGGCATAACATGTTCGGGATTGGCTTATTACTTGCAAGGAGTGGTGATGAAAAGTAAAGGCCCAGTGTACGTGACAGCATTTAATCCTCTGGGCATGGTAATCGTGGCTATCATGGGCTACTTCCTTCTGGCTGAACAAGTTTTCCTTGGAAGAATGAGTGGTGCCATCATCATTTGTTTGGGCCTATACTTTGTGGTGTGGGGAAAAAGCAAAGACAATTATGGCCCAGAAGACCCAAATATTCAAGAGCCCATAGAGGAAATGGACAATGCTAAGAAGGAAAATTTCACTTGCTGCACTCATGGAGTCACCACTGCCACCAACTTAGGAAATGGAAACACAACTCCAAGTGAAGAACAAGTGTGA 1143 0.4374 MENQQKQNWFEKAKPFAAVVSMQFGYAVMDVLSKAALNKGMSNYVFVVYRQAVAFLVMAPLAWFFERRKAKPKMTLSIFIKILVLSLIEPVIDQNLYFLGMKYTTATFAVTITNMLPAITFIFAWILRLEQVNIKSIRSQAKVVGTVATVSGAMIMTLIKGPVLFGSHGGNDQSKHNGTSTQHTIIGFIMMTIGCFCWASFVILQAITLKTYPAALSLSAWICLMATIEGAAVALVMERGNPSVWSIKFDMRLLCAVYSGITCSGLAYYLQGVVMKSKGPVYVTAFNPLGMVIVAIMGYFLLAEQVFLGRMSGAIIICLGLYFVVWGKSKDNYGPEDPNIQEPIEEMDNAKKENFTCCTHGVTTATNLGNGNTTPSEEQV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01379 380 Pfam EamA-like transporter family 186 325 IPR000620 GO:0016020
Vimu3g01379 380 Pfam EamA-like transporter family 23 137 IPR000620 GO:0016020
Vimu3g01379 380 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 152 - -
Vimu3g01379 380 PANTHER WAT1-RELATED PROTEIN 14 337 IPR030184 GO:0016020|GO:0022857
Vimu3g01379 380 SUPERFAMILY Multidrug resistance efflux transporter EmrE 223 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01379 Vimu-Chr3 25961356 25964217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01379 1 377 Nodulin-like Gene Family AT2G37460 58.442 2.43e-152 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01379 - - gmx:100811147 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01379 3 25961356 25964217 Vimu3g01379 3 25961356 25964217 ECH
Vimu6g02610 6 22710622 22714529 Vimu3g01379 3 25961356 25964217 PCT