LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu3g01379	ATGGAGAACCAGCAGAAGCAAAATTGGTTCGAAAAGGCAAAGCCATTCGCAGCAGTGGTATCAATGCAGTTTGGATACGCAGTCATGGATGTTCTATCCAAAGCTGCACTGAACAAAGGGATGAGCAATTATGTGTTCGTCGTTTATCGCCAAGCAGTTGCATTCCTTGTCATGGCTCCTTTGGCATGGTTTTTTGAGAGAAGGAAAGCAAAGCCAAAGATGACACTCTCAATTTTCATCAAGATTTTGGTGCTGAGCTTGATAGAGCCAGTTATTGACCAGAATCTCTATTTTTTGGGGATGAAGTACACAACCGCAACCTTTGCCGTTACGATCACCAATATGCTTCCTGCTATCACCTTTATCTTTGCTTGGATTCTTAGGCTTGAGCAAGTAAATATAAAAAGTATACGAAGCCAAGCGAAGGTGGTGGGAACTGTAGCAACTGTTTCGGGTGCCATGATCATGACACTGATTAAAGGGCCAGTGCTTTTTGGGTCACACGGAGGCAATGATCAATCCAAGCATAATGGCACAAGTACTCAGCATACAATCATAGGGTTCATAATGATGACTATTGGATGCTTTTGCTGGGCTTCTTTCGTGATCTTACAGGCTATTACTCTGAAAACCTACCCTGCTGCACTCTCTCTTTCTGCGTGGATATGCTTAATGGCCACAATTGAAGGTGCTGCAGTGGCTTTGGTCATGGAAAGGGGCAACCCTTCAGTTTGGTCCATAAAATTTGATATGAGGTTGCTCTGTGCTGTTTATTCTGGCATAACATGTTCGGGATTGGCTTATTACTTGCAAGGAGTGGTGATGAAAAGTAAAGGCCCAGTGTACGTGACAGCATTTAATCCTCTGGGCATGGTAATCGTGGCTATCATGGGCTACTTCCTTCTGGCTGAACAAGTTTTCCTTGGAAGAATGAGTGGTGCCATCATCATTTGTTTGGGCCTATACTTTGTGGTGTGGGGAAAAAGCAAAGACAATTATGGCCCAGAAGACCCAAATATTCAAGAGCCCATAGAGGAAATGGACAATGCTAAGAAGGAAAATTTCACTTGCTGCACTCATGGAGTCACCACTGCCACCAACTTAGGAAATGGAAACACAACTCCAAGTGAAGAACAAGTGTGA	1143	0.4374	MENQQKQNWFEKAKPFAAVVSMQFGYAVMDVLSKAALNKGMSNYVFVVYRQAVAFLVMAPLAWFFERRKAKPKMTLSIFIKILVLSLIEPVIDQNLYFLGMKYTTATFAVTITNMLPAITFIFAWILRLEQVNIKSIRSQAKVVGTVATVSGAMIMTLIKGPVLFGSHGGNDQSKHNGTSTQHTIIGFIMMTIGCFCWASFVILQAITLKTYPAALSLSAWICLMATIEGAAVALVMERGNPSVWSIKFDMRLLCAVYSGITCSGLAYYLQGVVMKSKGPVYVTAFNPLGMVIVAIMGYFLLAEQVFLGRMSGAIIICLGLYFVVWGKSKDNYGPEDPNIQEPIEEMDNAKKENFTCCTHGVTTATNLGNGNTTPSEEQV	380

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vimu3g01379	380	Pfam	EamA-like transporter family	186	325	IPR000620	GO:0016020
Vimu3g01379	380	Pfam	EamA-like transporter family	23	137	IPR000620	GO:0016020
Vimu3g01379	380	SUPERFAMILY	Multidrug resistance efflux transporter EmrE	49	152	-	-
Vimu3g01379	380	PANTHER	WAT1-RELATED PROTEIN	14	337	IPR030184	GO:0016020\|GO:0022857
Vimu3g01379	380	SUPERFAMILY	Multidrug resistance efflux transporter EmrE	223	330	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu3g01379	Vimu-Chr3	25961356	25964217	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu3g01379	1	377	Nodulin-like Gene Family	AT2G37460	58.442	2.43e-152	433

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu3g01379	-		-	gmx:100811147	582.022

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu3g01379	3	25961356	25964217	Vimu3g01379	3	25961356	25964217	ECH
	Vimu6g02610	6	22710622	22714529	Vimu3g01379	3	25961356	25964217	PCT

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