Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01359 GGGTTCTTTTCTTTGATTTTGATGGGAGAAGAAGCAGTTTGTGTGCATGCATTAGATGAAGGAAAGAAGGAAAACAATGAGGAATCGAGGACGGAACTGAAACGTGACTACGACCAATGCGTTAGTGATACTGAACGCCACATGTTTCCTCATAAGAAACAAGTTAAAGAAGTTTCGAACGATGAAGTGCGCTCTGAGGTTTCTAATCCCAACGTTTCTGCCGTAGAACATGCGCTAACTTTTCAAGATATCAGTAGCCAACCGACTGAATCCACGGACGTTAACCATGCAGAATGTGGAGAACTGACATCTACTTGTTTGGAGAATTCCAGTTCTGATGAGACCTTGAGTGATGAAGCTGGTGATTTGAATATTACTACTACTACAAATAATATTAATAACAACAACAACAATACTTCTCAGAGTGACAAGAACACGAGTAGTGCTGCAATGACATCCTGTGTTGTGATGGAAATTCCCAAGCATGCTAGTTCCTCTGGGATCAGGAAGATTACTTTTAAGTTTAGTAAAAAGAAAGAGGACTATGGTTACCAGCCACCTGCTCCTGTGCACCGTTACACTGATGGCAATCACATTGGTTTTCATGGGGTTGATGAATATTTGGCAAGGGATTATTGTAGTGGTGGGTTGGTAGAAAACATGGGATATGCTCATGATGGAGATGTGGAGTCGTACGCTCGCAATATGGAATTGAAAATGTCCAAAAAAGTAGTTCCCAACTGTTACCCTACAAATGTCAAAAAGCTTTTATCTACTGGCATCCTTGACGGAGCTGTAGTGAAGTATATTTATAATCCTGGAAAGGTTGAGCTACAGGGGATTATTGATGCTGGTGGATATTTGTGTGGCTGCTCAATGTGCAATTACTCTAGAATTCTTAGTGCCTATGAGTTTGAGCAGCATGCCGGGGCCAAGACTAGACATCCAAATAATCATATTTTCTTAGAAAATGGAAGACCGATATATAGTATTATACAGGAAATAAAAACGGCTCCACTCAGTATATTAGACGAGGTTATCAAGAATGTGGCTGGTTCCTCTGTCAATGAGGAGTCTTTCCAGGTTTGGAAAGAAAGTCTTCTACACAGCAACGGCAAGGTTCAGGCTTATAAAAATTCTAGCGCCAAACATGTTGGCATCTCTCATACAAACCTAAGTTTGGATATTGGCAACCTTTCAATTAAGGGGTTCTATAGTGAATGGGGCATATCTGATTATTTCCACGGCAAAGTAGGACTGACAAGGCACCTATTAAATTGTTGTTGCAGTCAATCTGTAGATAGTACTAGCCACTTGTCGTCTTTGCATGTACCAAGTCATTATGAGCAGCTGAAGTATATGAATCAGACAAATGACGAATGGAAACGTGTGATGAAAAAACCTTTACTTGGCATTCAATTACTCACTGTACTAATTTTCTGTAGGTCAAGCTCCTACTCTTCTAATTCTGGTGTACTGCTGAAAAGAAGTGCTGATGGTTGCACTAAGAGAAGGGACAATGATTTACACAGGTTACTTTTTATGCCAAATGGGCTACCTGATGGTGCTGAGTTGGCTTATTATGTCAAAGGACAGAAATTACTTGGAGGTTACAAACAGGGAAGCGGTATAGTCTGTGGTTGTTGTGATATTGAGATAAGCCCTTCACAGTTTGAAGCCCATGCTGGAATGGCTGCTAGGCGTCAACCTTATCGACACATATATACTTCCAATGGGTTAACGCTTCATGATATAGCTCTCTCATTGGCAAATGGTCAAAACCTTACCACGGGAGACAGTGATGATATGTGTGCAGTATGTGGCGATGGAGGAGATTTGATTCTTTGTAATGGATGCCCTAGGGCCTTTCATACAGCCTGCTTGGGTTTACAATGTGTTCCGGACAGTGGTTGGCAATGTCTAAATTGTGGAGATAGTGCTGGTAATGGAAGAGAATCTTCTCTTGTGAGGCCAATCATGATCCGGTTGACACGAGTTGATAAAACACCAGATTTTGAAATGGGTGGATGTGTTGTTTGCAGGGAACATGATTTCAGTGTTGCAAAATTTGATGAGCGAACGGTAATAATTTGTGACCAGTGTGAGAAGGAGTATCATGTTGGCTGCTTGCGGGATATTGGGCTATGTGAGTTGGAAGAGCTGCCCAAGGATAAGTGGTTTTGTTGCAGTGACTGCAATCGAATATATGTGGCTCTACAGAATTCAGTTTCTGCTGGAGCAGACAATATACCAGCTTCCTTGTCAGAACTAATAATCAGGAAGCACGAGGAGAAGGGACTATGTACCTATGGTTCCACAGATGATATTCAGTGGAGAATTTTAAGTGGAAAAAGCCGTTATCCGGAACATTTACCGCTGCTTTCAAGAGCTGCTGCAATTTTCCGAGAGTGTTTTGATCCCATTGTTGCAATATCTGGTCGTGATCTGATTCCGGTTATGGTCTATGGGAGAAATATTTCTGGCCAAGAGTTTGGGGGGATGTATTGCATTGTTTTAATAGTGAATTCTGTTGTAGTATCAGCTGGGCTTCTGAGGATTTTTGGCCGTAATGTTGCGGAGCTTCCACTCGTTGCTACTAGCAGAGTACATCAAGGAAAAGGATATTTCCAAGTGTTGTTCTCTTGCATAGAGAGGTTGCTCTCTTCTCTAAACGTAGAAAAGCTGGTGCTTCCTGCAGCAGGGGACGCAGAGTCAATTTGGACTAAGAAATTGGGCTTCCGAAAAATGAGTGAAGATCAGTTATCCAAACATCTCAGAGAGGTGCAGCTAACTCTCTTCAATAAAACTTCAATGCTGGAGAAGACAGTGCAGCAGACTATAGAATGA 2847 0.4173 GFFSLILMGEEAVCVHALDEGKKENNEESRTELKRDYDQCVSDTERHMFPHKKQVKEVSNDEVRSEVSNPNVSAVEHALTFQDISSQPTESTDVNHAECGELTSTCLENSSSDETLSDEAGDLNITTTTNNINNNNNNTSQSDKNTSSAAMTSCVVMEIPKHASSSGIRKITFKFSKKKEDYGYQPPAPVHRYTDGNHIGFHGVDEYLARDYCSGGLVENMGYAHDGDVESYARNMELKMSKKVVPNCYPTNVKKLLSTGILDGAVVKYIYNPGKVELQGIIDAGGYLCGCSMCNYSRILSAYEFEQHAGAKTRHPNNHIFLENGRPIYSIIQEIKTAPLSILDEVIKNVAGSSVNEESFQVWKESLLHSNGKVQAYKNSSAKHVGISHTNLSLDIGNLSIKGFYSEWGISDYFHGKVGLTRHLLNCCCSQSVDSTSHLSSLHVPSHYEQLKYMNQTNDEWKRVMKKPLLGIQLLTVLIFCRSSSYSSNSGVLLKRSADGCTKRRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGSGIVCGCCDIEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAVCGDGGDLILCNGCPRAFHTACLGLQCVPDSGWQCLNCGDSAGNGRESSLVRPIMIRLTRVDKTPDFEMGGCVVCREHDFSVAKFDERTVIICDQCEKEYHVGCLRDIGLCELEELPKDKWFCCSDCNRIYVALQNSVSAGADNIPASLSELIIRKHEEKGLCTYGSTDDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSVVVSAGLLRIFGRNVAELPLVATSRVHQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFRKMSEDQLSKHLREVQLTLFNKTSMLEKTVQQTIE 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01359 948 FunFam PHD zinc finger protein 824 931 - -
Vimu3g01359 948 Gene3D - 774 943 - -
Vimu3g01359 948 CDD PHD1_AIRE 603 643 - -
Vimu3g01359 948 PANTHER AUTOIMMUNE REGULATOR 21 942 - -
Vimu3g01359 948 ProSitePatterns Zinc finger PHD-type signature. 604 643 IPR019786 -
Vimu3g01359 948 Pfam Tify domain binding domain 280 334 IPR032308 -
Vimu3g01359 948 Pfam Tify domain binding domain 537 586 IPR032308 -
Vimu3g01359 948 SMART PHD_3 676 733 IPR001965 -
Vimu3g01359 948 SMART PHD_3 603 644 IPR001965 -
Vimu3g01359 948 ProSitePatterns Zinc finger PHD-type signature. 677 732 IPR019786 -
Vimu3g01359 948 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 673 735 IPR013083 -
Vimu3g01359 948 ProSiteProfiles Zinc finger PHD-type profile. 601 646 IPR019787 -
Vimu3g01359 948 FunFam PHD zinc finger protein 675 735 - -
Vimu3g01359 948 MobiDBLite consensus disorder prediction 126 146 - -
Vimu3g01359 948 SUPERFAMILY FYVE/PHD zinc finger 673 730 IPR011011 -
Vimu3g01359 948 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 591 669 IPR013083 -
Vimu3g01359 948 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 591 669 - -
Vimu3g01359 948 SUPERFAMILY FYVE/PHD zinc finger 599 643 IPR011011 -
Vimu3g01359 948 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 827 919 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01359 Vimu-Chr3 25296347 25310605 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01359 8 943 PHD Transcription Factor Family AT3G53680 50.105 0.0 874
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01359 - - gmx:100808999 1567.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01359 3 25296347 25310605 Vimu3g01359 3 25296347 25310605 ECH