Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01350 ATGGCGGCGGCGTCGCGACGGCTCCGGGACCTCCAATCACAGGCGGCGAACAAGATCTGTGTTGACTGCACCCAGAAGAACCCGCAGTGGGCCTCCGTCTCGTACGGCGTCTTCATGTGTTTGGAGTGCTCCGGCAAGCACCGTGGCTTGGGCGTTCACATCTCCTTCGTCCGATCTGTCACCATGGACTCCTGGTCCGAAGTCCAGATCAGGAAAATGGAAGCTGGCGGCAACGATAAGCTCAACGCCTTCCTCGCTCAGTACTCCATCCCCAAGGAGACAGACATCGTTACCAAATACAACACCAACGCCGCCGCCGTCTACCGCGATCGGATCCAGGCCATCGCCGACGGCCGTCCCTGGCGCGATCCGCCGGTAGTGAAGGAAAACCTCGCAGCAGGCAAGGGGAAGCCGCCGCTGACGCAGACGCGAAGAGCTAACGAGGGAGGATGGGACGATTGGGACAACGGGGGGAGTTCGGCGGACATCCGGAGCAGGTCAACCGGGGACTTCAGGAGCTTGAACGGCGCGGGTGTGCCGTCGAGGTCTAGGTCGACGGAGGACATCACGCGGTCGCAGCTGGAAGCCTCGGCGGCGAACAAGGAAAGCTTCTTCGCGAGGAAGATGGCGGAGAACGATTCGCGGCCCGAGGGGCTTCCGCCGTCGCAGGGAGGGAAATACGTAGGGTTCGGGTCCAGTCCGCCGCCTCAGCGGAGGAACGATGCTCAAAACGATTATTTATCTGTCGTTTCGCAGGGTATTGGGAAATTATCTTTGGCTGCTGCCTCTGCTGCTCAGTCTGCGGCTAATGTTGTTCAGGCGGGCACGAAGGAGATCACTTCAAAGGTCAAGGAAGGTGGTTATGATCACAAGGTTAATGAAACTGTCACTGTTGTCACTCAGAAGACATCAGAGATTGGACAGAGGACTTGGGGCTTAATGAAAGGAGTTATGGCCATTGCCTCCCAGAAGATCGAGGAGTACACTAAAGATGAAACAAACTGGAAGACTGATAACTGGCAACGAAATGAGAGTGATAGAAATGGTTATTATCAGGATTTTAACCAACAGAACAAAGGCTCGAATTCTGCTCCTGGAAGAGAACAATCTTCGTCAGGGCAATATAAAACTCATAGCTCAAGCTCTTTGGATGACTGGGATCACCAAGATAGCAGTAAGCAAGAACCAGCTAAAGGATCAACTCCCTATTCATCAGGTGGGCAGTCAAGCACCTTCAACTCAAGCTCTTGGGATGATTGGGAACAAACAGATTCTAGGAAGCAAGAACCAGTTAAAGGATCAGCTCCTCATAATAATGATGATTGGGCTGGTTGGGATAATGCCAAAGAAGATGGATTTGATAATTTGTACCAAGGTGCGTCTAATAAGAAAGGTCTTGCTCATAATGGAAAATCGGATGGCACTTGGACAGAGGGAGGCTTTCTCTAA 1449 0.5307 MAAASRRLRDLQSQAANKICVDCTQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEVQIRKMEAGGNDKLNAFLAQYSIPKETDIVTKYNTNAAAVYRDRIQAIADGRPWRDPPVVKENLAAGKGKPPLTQTRRANEGGWDDWDNGGSSADIRSRSTGDFRSLNGAGVPSRSRSTEDITRSQLEASAANKESFFARKMAENDSRPEGLPPSQGGKYVGFGSSPPPQRRNDAQNDYLSVVSQGIGKLSLAAASAAQSAANVVQAGTKEITSKVKEGGYDHKVNETVTVVTQKTSEIGQRTWGLMKGVMAIASQKIEEYTKDETNWKTDNWQRNESDRNGYYQDFNQQNKGSNSAPGREQSSSGQYKTHSSSSLDDWDHQDSSKQEPAKGSTPYSSGGQSSTFNSSSWDDWEQTDSRKQEPVKGSAPHNNDDWAGWDNAKEDGFDNLYQGASNKKGLAHNGKSDGTWTEGGFL 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01350 482 CDD ArfGap_ArfGap1 4 118 - -
Vimu3g01350 482 MobiDBLite consensus disorder prediction 119 242 - -
Vimu3g01350 482 MobiDBLite consensus disorder prediction 344 380 - -
Vimu3g01350 482 Pfam Putative GTPase activating protein for Arf 6 106 IPR001164 GO:0005096
Vimu3g01350 482 PRINTS HIV Rev interacting protein signature 17 36 IPR001164 GO:0005096
Vimu3g01350 482 PRINTS HIV Rev interacting protein signature 36 53 IPR001164 GO:0005096
Vimu3g01350 482 PRINTS HIV Rev interacting protein signature 57 78 IPR001164 GO:0005096
Vimu3g01350 482 MobiDBLite consensus disorder prediction 420 434 - -
Vimu3g01350 482 SUPERFAMILY ArfGap/RecO-like zinc finger 6 112 IPR037278 -
Vimu3g01350 482 Gene3D Arf GTPase activating protein 1 124 IPR038508 -
Vimu3g01350 482 ProSiteProfiles ARF GTPase-activating proteins domain profile. 5 111 IPR001164 GO:0005096
Vimu3g01350 482 MobiDBLite consensus disorder prediction 336 482 - -
Vimu3g01350 482 FunFam ADP-ribosylation factor GTPase-activating protein 1 130 - -
Vimu3g01350 482 MobiDBLite consensus disorder prediction 395 419 - -
Vimu3g01350 482 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 400 IPR044519 GO:0005096|GO:0016192
Vimu3g01350 482 SMART arf_gap_3 2 121 IPR001164 GO:0005096
Vimu3g01350 482 MobiDBLite consensus disorder prediction 160 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01350 Vimu-Chr3 24932901 24935764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01350 6 92 C2H2 Transcription Factor Family AT4G21160 48.864 3.92e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01350 K12492 - gmx:100792658 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01350 3 24932901 24935764 Vimu3g01350 3 24932901 24935764 ECH
Vimu6g02620 6 22805307 22809230 Vimu3g01350 3 24932901 24935764 PCT
Vimu2g01753 2 12590791 12598077 Vimu3g01350 3 24932901 24935764 PCT