Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01346 ATGGCCGGCAAAGGTGAGGGTCCAGCCATCGGAATCGATCTCGGAACCACGTACTCCTGCGTCGGTGTCTGGCAGCATGATCGCGTCGAGATCATTGCCAACGACCAAGGTAACAGAACGACGCCGTCTTATGTTGGGTTCACCGACACCGAGCGTCTCATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCTATTAACACCGTTTTTGGTAAGTTCTTTTCCTTCAGTCACATAGCTATGATACCAAGATTCATTTTTACTGCATGTTTATCGGTTAATGTAGATGTTCTTATTGGTGTTATGATGTTTTTGGTTTTTCTTTTTACTTGCGTGTGTGACTTGGATTGGAGAGTTGATTTTTAG 369 0.4607 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPINTVFGKFFSFSHIAMIPRFIFTACLSVNVDVLIGVMMFLVFLFTCVCDLDWRVDF 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01346 122 Gene3D - 2 83 - -
Vimu3g01346 122 Pfam Hsp70 protein 9 71 IPR013126 GO:0005524|GO:0140662
Vimu3g01346 122 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vimu3g01346 122 PANTHER HEAT SHOCK PROTEIN 70KDA 9 72 IPR013126 GO:0005524|GO:0140662
Vimu3g01346 122 FunFam Heat shock cognate 71 kDa protein 4 97 - -
Vimu3g01346 122 SUPERFAMILY Actin-like ATPase domain 8 73 IPR043129 -
Vimu3g01346 122 PRINTS 70kDa heat shock protein signature 8 21 - -
Vimu3g01346 122 PRINTS 70kDa heat shock protein signature 36 48 - -
Vimu3g01346 122 PRINTS 70kDa heat shock protein signature 58 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01346 Vimu-Chr3 24843402 24843770 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01346 1 80 Calmodulin-binding Proteins AT5G02500 82.558 7.54e-46 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01346 K03283 - gmx:100798307 150.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02624 6 22884207 22887486 Vimu3g01346 3 24843402 24843770 ECH
Vimu3g01346 3 24843402 24843770 Vimu6g02624 6 22884207 22887486 ECH
Vimu3g01346 3 24843402 24843770 Vimu3g01346 3 24843402 24843770 ECH
Vimu6g01243 6 12488024 12491394 Vimu3g01346 3 24843402 24843770 ECH
Vimu3g01346 3 24843402 24843770 Vimu6g01243 6 12488024 12491394 ECH
Vimu6g02624 6 22884207 22887486 Vimu3g01346 3 24843402 24843770 PCT