Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01330 ATGGGTCTTAGAGACATTGGGGCTTCACTGCCCCCAGGGTTTCGCTTTTATCCCAGTGATGAGGAGTTGGTCCTTCATTACCTCTACAAAAAGGTCACAAATGAGGAAATTCTAAAGGGTACCCTGATGGAAATCGACTTGCACACATGCGAGCCATGGCAACTTCCAGAGGTGGCTAAGCTTAACGCAAACGAATGGTACTTCTTCAGCTTTCGTGACCGCAAATATGCAACCGGCTACCGAACCAATCGTGCAACGACATCTGGCTATTGGAAAGCCACGGGAAAGGATCGTACGGTTTTTGACCCCTCCACGCGTGAGGTTGTAGGGATGAGGAAGACTTTGGTGTTCTACAGGAACAGGGCCCCGAATGGCATCAAAACGGGTTGGATCATGCACGAGTTTCGCTTGGAGACGCCACATATGCCCCCTAAGGAGGACTGGGTTTTGTGTAGAGTGTTTCACAAAGGGAAAGCAGACAACAGTGCCAAACTCAACTCACAACTCATGTATGAGAACACAGTTCCATCCCTAACTCTGGCTTCGTCATCTCCAACCAACCAAACCATTGGGTATAACCAACTTCCCCATTTCTCTTCCTCAATCACACCCCATCATAATCATTACCATCATCATCATCATCATCATCATCAAAATCAAACCCAAAACCAAACCCAAAACAACAACTCCTTCATGGGTCTCCTTCACTTTTCTAGGGAAACAAATGCAAACTCTAGCACCATCACTCAGATAAGTCCCAAATGTGATGATGGTTATGGGTTTCTATGGGACATGGAGATCGAAGAAAATAGCTTCAATGATGGCGTGGCCTCGAATATGGTCGACGGAATGAGATTCGAGGTTGATAATAATAATGTGATCTTGTTATGA 891 0.459 MGLRDIGASLPPGFRFYPSDEELVLHYLYKKVTNEEILKGTLMEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGYRTNRATTSGYWKATGKDRTVFDPSTREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKADNSAKLNSQLMYENTVPSLTLASSSPTNQTIGYNQLPHFSSSITPHHNHYHHHHHHHHQNQTQNQTQNNNSFMGLLHFSRETNANSSTITQISPKCDDGYGFLWDMEIEENSFNDGVASNMVDGMRFEVDNNNVILL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01330 296 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Vimu3g01330 296 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 236 - -
Vimu3g01330 296 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Vimu3g01330 296 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Vimu3g01330 296 MobiDBLite consensus disorder prediction 204 219 - -
Vimu3g01330 296 MobiDBLite consensus disorder prediction 201 226 - -
Vimu3g01330 296 Gene3D NAC domain 19 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01330 Vimu-Chr3 24114019 24118653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01330 6 229 NAC Transcription Factor Family AT1G56010 47.639 4.79e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu3g01330 NAM 7.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01330 - - gmx:100783645 488.419