Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01326 CAGACAGATACAACTTCTGTGAAATGTCTGATCAACAGCATTTCTCGATTCATTCATCTGGTTTCATGTCAAACAATGAAACCTATGCCCTTTCAGAAGATCTGTAATAATATGGTTGGGGTGTTAAAGCGTTTGAAGCCGGTGCTTGATGACGTTATGGATCACCAAATTCCATCAGATGTAAATCTATGTAAAGAGTGTGAGGAATTGGACAAGCGAGTTAATGAAGCTAGAGATTTCATTGAAAAATGGAGTCCAAAGATGAGCAGGATTCACAGTGTTCTACAAGGTGGTACATTATTGATTAAGTTACAGAGCACTTCACTAGATATCTGTCACATGATAGTTAGATCCTTACAGTCACCTCCATCTGTATCAGTTTTGGCTAATCTCCAGCACTATATCCAGGAACTTCAGTGTCTTAAGAAGGAAATTGCAATGGTCCATATAGAAGAAGCACTGAGAAACCAAAGAGACAATATTGAACCATGCAAGGAGCATCTGACCGAAATTATTGAGTTACTTAAATTGACACCAAATCAGGAACTCTTAAGAGAAAGCATTGCTGTGGAAAAGGAAAGGTTGAACGCTGAAGCCAATAAAATGATAGCGGACATAGAAGAAATTAATGAAATTGTGAATCTTGTCCGTAGTTTGCGTGATTATATGATCAAAACTGAGTGTCCTGTAGTCAAGAGTGGTCTCTCAGTCCCTCCATACTTCCTCTGTCCTTTATCGTTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCTGGTCAAACATATGAGAGGCAATCCATCCAAAAGTGGCTTGATCATGGGCTGACAGTTTGTCCCAAAACTCGTCAGAGACTTACTCATACAAATCTCATTCCCAATTACACTGTCAAAGCTATGATAGCAACTTGGTGTGAGGAAAATAATGTTAAACTTTCTGGTATCTCTGACCACAAAAAATCTTCATGTTTCACATCCTCCATGGATAATTTATTGCCTCAAGATTTAACTCATGATTGCCGTGTTGGGTCTCTCTCTAGCAGAAATTCCATTTCAAGATCATCTCTTCAAACTGAAAATGCATTTGAAAAGCAAAAGGCTGATAACTCTTTCAGATTATGTGGAGAAAACAATGGATGCCAGAGTGGAACAGCTGAAAGGTGTGAGCAAGAGTCCCCATATACTCACAGCAGAAGTGAATCATTTTCAAGTTCAATTTCTAGTACTGATTGTGCAGTTTCAAAAGAGGTGTCAGGGATATCCAATAGGCATCAAAATGTGAAGGTGCTCTCTGGAGAAATCACAAACACGTGTCCTTCTCCTGGTAACAAACAATCAGGGATATCTCCTTGGTTATCTGGAAAAACATTTCAAAACCCTGGATCAAATGTAGGATTGTTGGAGAATGAAAATCATAATGATAATAATAATAGTGGTAGTCTGTCAAGATATGATTCACATTCTATTTCAAACTCCGGGTCAGATGAATTGACCACCACATCTCATGTCATTAGATTGATTGAAGACCTTCACAGTCAATCAGTTGAAACACAGACTACTGCTGCTGAAGAATTGAGGCTCCTTACAAAGCATAACCAGGAAAACCGTGTCATTGTAGGGCAGTGTGGGGCTGCCATGCCTTTGCTTTCATTACTACATTCAGACGTGAAGGTAACACAAGAGCATGCTGTGACAGCTCTACTAAACTTGTCAATTAATGAAGAGAACAAGGCCTTGATCATGGAAGCAGGAGCCATAGAGCCTCTTATCCATGTTTTGAAGACAGGAAATGATAGTGCCAAGGCGAATTCTGCAGCAACTCTATTCAGCCTCTCAGTACTTGAGAACAATAAGGCAAGAATTGGCCGTTCCAGAGCTGTTAAAGCTTTGGTTGATCTTCTTGCCTCAGGGACTCTCAGAGGAAAGAAGGATGCTGCTACTGCTTTATTTAACCTTTCAATATTTCATGAGAATAAAGCTCGTATAGTTCAAGCTGGAGCAGTGAAATTTCTGGTTCGGTTATTGGATGATGCTGGTGGAATGGTTGACAAGTCTGTTGCTCTTCTGTCAAACCTGTCAACCATTCCAGAGGGCCGATTAGAAATTGCAAGGGAAAGGGGTATCCCCTTACTTGTTGAAGTTGTTGAGTCAGGTTCTCAGAGGGGAAAGGAAAATGCTGCCTCCATTCTCTTGCAATTATGCCTTCACAGTACTAAGTTCTGTAATCTGGTTTTGCAAGAAGGCGCTGTCCCTCCCCTAGTTGCATTGTCAGTATCTGGTACACCAAGAGCAAAGGAAAAGGTGTGGAGCTTATTATCCTTATTGGTGGTTAACAGTTTTATTGTCTGTGTATATCTCTCAGTCAGTTTTCTGCATTTAGCTGAATTCTTTGTCGGTAGAATTGTGTTCAAGCCTTGGAGTCAATCATAA 2427 0.4026 QTDTTSVKCLINSISRFIHLVSCQTMKPMPFQKICNNMVGVLKRLKPVLDDVMDHQIPSDVNLCKECEELDKRVNEARDFIEKWSPKMSRIHSVLQGGTLLIKLQSTSLDICHMIVRSLQSPPSVSVLANLQHYIQELQCLKKEIAMVHIEEALRNQRDNIEPCKEHLTEIIELLKLTPNQELLRESIAVEKERLNAEANKMIADIEEINEIVNLVRSLRDYMIKTECPVVKSGLSVPPYFLCPLSLELMLDPVIVASGQTYERQSIQKWLDHGLTVCPKTRQRLTHTNLIPNYTVKAMIATWCEENNVKLSGISDHKKSSCFTSSMDNLLPQDLTHDCRVGSLSSRNSISRSSLQTENAFEKQKADNSFRLCGENNGCQSGTAERCEQESPYTHSRSESFSSSISSTDCAVSKEVSGISNRHQNVKVLSGEITNTCPSPGNKQSGISPWLSGKTFQNPGSNVGLLENENHNDNNNSGSLSRYDSHSISNSGSDELTTTSHVIRLIEDLHSQSVETQTTAAEELRLLTKHNQENRVIVGQCGAAMPLLSLLHSDVKVTQEHAVTALLNLSINEENKALIMEAGAIEPLIHVLKTGNDSAKANSAATLFSLSVLENNKARIGRSRAVKALVDLLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVRLLDDAGGMVDKSVALLSNLSTIPEGRLEIARERGIPLLVEVVESGSQRGKENAASILLQLCLHSTKFCNLVLQEGAVPPLVALSVSGTPRAKEKVWSLLSLLVVNSFIVCVYLSVSFLHLAEFFVGRIVFKPWSQS 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01326 808 Pfam Armadillo/beta-catenin-like repeat 572 611 IPR000225 GO:0005515
Vimu3g01326 808 Pfam Armadillo/beta-catenin-like repeat 531 570 IPR000225 GO:0005515
Vimu3g01326 808 Pfam Armadillo/beta-catenin-like repeat 616 652 IPR000225 GO:0005515
Vimu3g01326 808 SMART arm_5 531 571 IPR000225 GO:0005515
Vimu3g01326 808 SMART arm_5 572 612 IPR000225 GO:0005515
Vimu3g01326 808 SMART arm_5 654 693 IPR000225 GO:0005515
Vimu3g01326 808 SMART arm_5 694 734 IPR000225 GO:0005515
Vimu3g01326 808 SMART arm_5 736 776 IPR000225 GO:0005515
Vimu3g01326 808 SMART arm_5 613 653 IPR000225 GO:0005515
Vimu3g01326 808 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 624 666 IPR000225 GO:0005515
Vimu3g01326 808 PANTHER U BOX DOMAIN-CONTAINING 30 774 - -
Vimu3g01326 808 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 665 706 IPR000225 GO:0005515
Vimu3g01326 808 SUPERFAMILY ARM repeat 504 785 IPR016024 -
Vimu3g01326 808 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 311 IPR013083 -
Vimu3g01326 808 Pfam U-box domain 237 308 IPR003613 GO:0004842|GO:0016567
Vimu3g01326 808 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Vimu3g01326 808 SMART Ubox_2 240 303 IPR003613 GO:0004842|GO:0016567
Vimu3g01326 808 FunFam RING-type E3 ubiquitin transferase 234 310 - -
Vimu3g01326 808 Coils Coil 180 212 - -
Vimu3g01326 808 CDD RING-Ubox_PUB 238 290 IPR045210 -
Vimu3g01326 808 SUPERFAMILY RING/U-box 236 311 - -
Vimu3g01326 808 Gene3D - 480 781 IPR011989 -
Vimu3g01326 808 MobiDBLite consensus disorder prediction 432 494 - -
Vimu3g01326 808 MobiDBLite consensus disorder prediction 382 403 - -
Vimu3g01326 808 FunFam RING-type E3 ubiquitin transferase 486 778 - -
Vimu3g01326 808 ProSiteProfiles U-box domain profile. 236 310 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01326 Vimu-Chr3 23868494 23871290 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01326 3 772 U-box Gene Family AT3G54790 53.599 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01326 - - gmx:100800949 1258.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01326 3 23868494 23871290 Vimu3g01326 3 23868494 23871290 ECH