Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01322 ATGCCGTCGCTCCTCTCTCCGGGGAGAATCCACTGTCTGGAGGTGGAGAATTTCAAGTCCTACAAGGGGTTCCAAATTATCGGCCCCTTCTACGACTTCACCGCCATCATCGGCCCCAACGGCGCCGGTAAGTCCAACCTCATGGACGCCATCAGCTTCGTCCTCGGTGTCCGCACCGGCCAGCTCCGCGGCGCGCAGCTCAAGGACCTCATCTACGCCTTCGACGACCGCGAGAAAGACCAGAAGGGTCGCCGAGCCTTCGTCCGCCTTGTCTACCACCTCGCCAACTCCACTGAGATTAGATTCACCCGCACCATCACCAGCGCCGGCTCCAGCGAGTACCGCATCGACGACACCCTCGTCAATTGGGACACCTACAACAACAGACTCAAGTCCCTTGGCATCCTCATCAAAGCTCGAAATTTCTTGGTCTTTCAGGGTGATGTTGAGTCCATTGCGTCGAAGAATCCCAAAGAGCTGACTGCACTGGTGGAGCAGATATCTGGCTCTGACGAGTGCAAGAGGGACTATGAGCAGTTTGAAGAGGAAAAAGGCACTGCTGAAGAAAAATCAGCACTTGTTTATCAGAAGAAGAAGACTGTTGTTATGGAAAGAAAGCAGAAGAAAGAACAGAAGGAAGAAGCAGAGAAGCATCTCCGCCTGCAACATGAACTGGATCTTGAAGATGAGAAGAGAAGTCGTGAAGGTGTTCTTAAAGAGCTGGAAAATTTTGAAAATGAAGCTAGTAAAAAGAAAAAAGAGCAGGCCAAATATCTCAAAGAGATTACACTGCGGGAAAAGAGAATTAATGAGAAAAACAGCAAACTTGATAAGAGTGTAAGTTTGGAATATGGTTTTGTTAATATGGGATTAGTGAGTGGTAAGGATGACAACGCGTGTCGACACAAAAGAGAGATAAAGAGCTGGGAGTACCTGAATCATCTAGTTCAGCCCGAGCTTCTGAAGTTAAAGGAGGAAATGGCTCGTATTACTTCAAAAATTAAAAAAGGGAAGAAAGAACTTGATAAAAAAAAGGTTGAACGGACGAAGCATGATGCTGATATTGCATTACTACAGAATGGCATCCAGGATCTTACAGCGAAAATGGCAGACCTTCAGGAAAAGAGACGGGGTAGAGATAGTCTGTGTGCTAGACTGTTAGGGATACAAGGTGAAGCTATTTTGTCAATTGTCAAAGAGGAGGCTGGGATGAAAACTGCAAAGCTTAGAGAAGAAAAGGAGCTTCTAGATAGGAAACTAAATGCTGATAGCGAAGCTCAAAAGAATTTGGAAGAAAATCTTCAACAGTTAAGAAACAGGGAATCTGAACTGACTTCACAGGAAGAACAGATGCGAGCAAGGCGTGAAAAGATTGTTGATAATTCTACAAAAAATAAAAATGGCCTTGATGACTTGAAAAAGGAACTACGTGTGATGCAGGACAAACATCGTGATTCCAGGAAAAAATATGAAAATTTGAGGTTAAAAATTGGTGAAGTAGAAGATCAACTTCGTGAATTGAGGGCTGATAGATATGAAAGTGAGAGAGATGTTAGGTTGTCTCAGGCTGTTGAGACTCTGAAGCGCCTGTTTCAAGGAGTTCATGGTCGCATGACTGATCTTTGTAGGCCAACACAGAAGAAGTATAACCTTGCTGTTACTGTTGCTATGGGTAAATTTATGGACGCAGTTGTAGTTGACAAGGAGTCAACTGGGAAGGAATGCATCAAGTATTTAAAAGATCAGAGGCTTCCCCCCCAGACATTTATTCCTCTGGAATCAGTTCGGGTGAAGCCAATAATGGAAAGATTGCGCACATTAGGGGGTACAGCAAAACTGGTCTTTGATGTGATTCAATATCCTTTTTCTCTAGTGGCTACCATGAAGAACTGGTTCTGTTTATCTAGCATTATAAATGGTGTTGAGGCTACGGGAGCCACTGAGCGAAGACCAGATATGTCTTCGTTAATTTATGCTCAGTTGGGCCTTGAATTGACAACGGTGAATAGTGATTGCCGTTTTTATAACATAGTCACAGAACAAAAAGTTCCTGCAAATATGGATGAAGCACTTGAAGTTGATTATAATATCACTATGGATGACATGGTATTGGGTGTTGCTCAGAAAGGTGAACAGGCAATGAAAATGTCTCTTGAAGACGGTTTAGAATATGGCCTCAAGATTCGGCGTACTGCACGCATCGAAAGCAGTGAAGAAATGAAACAAAACAGGTGTGCAGAAATGGTGGATGCCATGAAGAAGGTGGCGAAGCTGGACGTTGAGCGGAAAGCTGTTAGCATAATTGATGTTTTGAGCACTAGAAAGGATTATATTGCTGAGGTAGAAGCATTGGAAGTTGCACGGGGACAGTTAGGCACCGAAACTGATGAAGTGAGTGATATAATAAAGAAACTTGATGCATGCAAGTTTGATCCCTCCTTGGAGAAGGCAATTCTCTTTGCTGTTGGGAACACTCTTGTTTGTGATGATCTGGAAGAGGCCAAAATTTTAAGCTGGAGTGGAGAGAGGTTTAAAGTTGTAACTGTTGATGGAATTCTGCTCACAAAATCCGGCACAATGACTGGAGGCACTAGTGGTGGAATGGAAGCAAGGTCAAAACAGTGGGATGACAAGAAAATTGAAGGACTTAATAAAAAGAAAGAGCAATATGAAGCAGAGTTGGAATCACTAGGATCAATAAGGGATATGCACCTTAAAGAGTCTGAAGCATCTGGAAAAATTAGTGGACTTGAGAAGAAAATTCAATATGCTGAAATTGAGAAGTCAAGCATTGAAGATAAACTTTCAAATCTGAGCCACGAAAAGAAGACAATCAAAGAAAGAATTGAATGTATCAGTCCAGAACTGAAGAAGTTAAACGATGCTGTTAACAAGAGCAATGCAGAAATACGAAAGCTTGAGAGGCGGATAAATGAAATTACTGATAGGATATACAGAGACTTTAGCAAGTCAGTTGGGGTAGCAAACATCCGTGAATATGAAGAAAATAGACTCAAGGCTGCTCAAAGTATAGCGGAGGAGAGGCTGAACTTGAGTAGCCAACTTTCAAAATTAAAATATCAGTGTGTTCCTTTTCTTGTACTTAAATTACATCTTTCGCAGTCTGTTAACTTGACCTACATAATTTACATGCTTGAAGGTGTTTCTGATCTTACATACAAGTTAGAATATGAGCAAAATCGGGACATGAGTTCAAGAATTCTAGAATTGGAAGCTTCTCTAAGTGCTTTAGAGAAAGATTTAAAACGTGTACAGGACAGAGAGGCTGCAGCGAAGGTAGCGGCTGAGAAGTCTACTGAAGAGGTTAATCAGTTAAAGGAAGAAGTTAAAGAGTGGAAATCAAAGTCAGAAGAATGTGAGAAGGAAATCCAAGAGTGGAAGAAGAAAGCTTCTGCAGCCACAACAAACATATCCAAACTTATTCGCCTGATAAATTCTAAGGAGGCACAGATTGAACAGTTGAATGTGAAAAAGCAGGAAATATTAGAAAAGTGTGAACTTGAACAGATTAACCTCCCTATCATATCAGATCCCATGGATACTGATAACTCAGTACCAGCTCCACATTTTGATTTTGATCAACTAAGTAGGGCACTGAAAGATAAGAGGCACTCAGACAGGGATAAAATTGAGGGAGACTTTAAGCAAAAAATTGATGCCTTGGTAGCTGAGATTGAAAGAACAGCACCAAATTTGAAGGCATTGGACCAATATGAGGCTCTGTTGGAAAAGGAAAGAGCTGTAACTGAGGAGTTTGAAGCTGTCAGGAAAGAGGAGAAGGAAAAAACGCAGAGATTCAATGAGGTTAAGCAGAGAAGAGTGGGTAAGGTCCTGCTTTGTCCTCTTTGTTACCAGTCCGTCTGCTGCAACTTCCTGCTGGCTGTCACCTTTTTGGCTACAGATTTTAGGGTTAAGTGTGCCTTGAGGAGTGGAACCCACCCTAAGAAGTTGCATGACTACAAACTGGGAAAACCTTGGAAGAAGAATTCGCTGATGAGGTACCAATTGTTCATGGATGCTTTTAACCATATATCTGGTAATATAGATAAAATTTACAAACAACTTACAAAGAGCAATACACATCCACTGGGGGGAACAGCATATCTAAACTTGGAAAATGACGATGATCCATTTCTCCATGGCATCAAGTACACTGCTATGCCCCCAACGAAGCGTTTCCGTGATATGGAGCAACTATCTGGTGGGGAAAAGACAGTTGCAGCACTTGCATTGTTATTTTCCATCCACAGTTACAAGCCTTCACCATTTTTTATACTGGACGAAGTTGATGCTGCGTTGGACAACTTGAATGTTGCCAAGGTTGCTGGCTTTATTCGTTCAAAATCATGCGAAGGGGCAAGGACTAGCCAGGATCCTGATGGTGGAAGTGGTTTTCAGAGTATTGTGATATCACTGAAAGACACTTTTTATGACAAAGCTGAAGCGCTAGTTGGTGTTTACAGAGATTCTGAAAGAGGTTGTTCGAGAACCCTCACATTTGATCTGACCAAATACCGGGAGTCTTAA 4548 0.4222 MPSLLSPGRIHCLEVENFKSYKGFQIIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDREKDQKGRRAFVRLVYHLANSTEIRFTRTITSAGSSEYRIDDTLVNWDTYNNRLKSLGILIKARNFLVFQGDVESIASKNPKELTALVEQISGSDECKRDYEQFEEEKGTAEEKSALVYQKKKTVVMERKQKKEQKEEAEKHLRLQHELDLEDEKRSREGVLKELENFENEASKKKKEQAKYLKEITLREKRINEKNSKLDKSVSLEYGFVNMGLVSGKDDNACRHKREIKSWEYLNHLVQPELLKLKEEMARITSKIKKGKKELDKKKVERTKHDADIALLQNGIQDLTAKMADLQEKRRGRDSLCARLLGIQGEAILSIVKEEAGMKTAKLREEKELLDRKLNADSEAQKNLEENLQQLRNRESELTSQEEQMRARREKIVDNSTKNKNGLDDLKKELRVMQDKHRDSRKKYENLRLKIGEVEDQLRELRADRYESERDVRLSQAVETLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVDKESTGKECIKYLKDQRLPPQTFIPLESVRVKPIMERLRTLGGTAKLVFDVIQYPFSLVATMKNWFCLSSIINGVEATGATERRPDMSSLIYAQLGLELTTVNSDCRFYNIVTEQKVPANMDEALEVDYNITMDDMVLGVAQKGEQAMKMSLEDGLEYGLKIRRTARIESSEEMKQNRCAEMVDAMKKVAKLDVERKAVSIIDVLSTRKDYIAEVEALEVARGQLGTETDEVSDIIKKLDACKFDPSLEKAILFAVGNTLVCDDLEEAKILSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKIEGLNKKKEQYEAELESLGSIRDMHLKESEASGKISGLEKKIQYAEIEKSSIEDKLSNLSHEKKTIKERIECISPELKKLNDAVNKSNAEIRKLERRINEITDRIYRDFSKSVGVANIREYEENRLKAAQSIAEERLNLSSQLSKLKYQCVPFLVLKLHLSQSVNLTYIIYMLEGVSDLTYKLEYEQNRDMSSRILELEASLSALEKDLKRVQDREAAAKVAAEKSTEEVNQLKEEVKEWKSKSEECEKEIQEWKKKASAATTNISKLIRLINSKEAQIEQLNVKKQEILEKCELEQINLPIISDPMDTDNSVPAPHFDFDQLSRALKDKRHSDRDKIEGDFKQKIDALVAEIERTAPNLKALDQYEALLEKERAVTEEFEAVRKEEKEKTQRFNEVKQRRVGKVLLCPLCYQSVCCNFLLAVTFLATDFRVKCALRSGTHPKKLHDYKLGKPWKKNSLMRYQLFMDAFNHISGNIDKIYKQLTKSNTHPLGGTAYLNLENDDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARTSQDPDGGSGFQSIVISLKDTFYDKAEALVGVYRDSERGCSRTLTFDLTKYRES 1515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01322 1515 Coils Coil 170 190 - -
Vimu3g01322 1515 CDD ABC_SMC1_euk 1394 1509 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Vimu3g01322 1515 Gene3D - 8 235 IPR027417 -
Vimu3g01322 1515 Gene3D - 1323 1514 IPR027417 -
Vimu3g01322 1515 Coils Coil 320 340 - -
Vimu3g01322 1515 Coils Coil 227 261 - -
Vimu3g01322 1515 Pfam SMC proteins Flexible Hinge Domain 532 632 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vimu3g01322 1515 SUPERFAMILY Smc hinge domain 496 632 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vimu3g01322 1515 Pfam RecF/RecN/SMC N terminal domain 10 1496 IPR003395 -
Vimu3g01322 1515 Coils Coil 413 454 - -
Vimu3g01322 1515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 1496 IPR027417 -
Vimu3g01322 1515 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 9 621 - -
Vimu3g01322 1515 Coils Coil 355 375 - -
Vimu3g01322 1515 Coils Coil 198 218 - -
Vimu3g01322 1515 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Vimu3g01322 1515 Gene3D - 793 864 - -
Vimu3g01322 1515 Coils Coil 1067 1178 - -
Vimu3g01322 1515 Coils Coil 880 900 - -
Vimu3g01322 1515 SMART SMC_hinge_2 532 838 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vimu3g01322 1515 FunFam Structural maintenance of chromosomes 1A 9 224 - -
Vimu3g01322 1515 Coils Coil 914 948 - -
Vimu3g01322 1515 PIRSF SMC 8 642 IPR024704 GO:0005524|GO:0016887
Vimu3g01322 1515 PIRSF SMC 1334 1512 IPR024704 GO:0005524|GO:0016887
Vimu3g01322 1515 PIRSF SMC 758 1283 IPR024704 GO:0005524|GO:0016887
Vimu3g01322 1515 SUPERFAMILY Smc hinge domain 799 887 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vimu3g01322 1515 Coils Coil 1245 1265 - -
Vimu3g01322 1515 Coils Coil 997 1017 - -
Vimu3g01322 1515 Coils Coil 956 983 - -
Vimu3g01322 1515 Coils Coil 469 517 - -
Vimu3g01322 1515 Gene3D - 494 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01322 Vimu-Chr3 23679754 23705384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01322 8 114 Structural Maintenance of Chromosomes family AT5G61460 34.211 3.94e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01322 K06636 - gmx:100785315 948.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01322 3 23679754 23705384 Vimu3g01322 3 23679754 23705384 ECH