Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01318 ATGGGAAGAAGTTCTTGCTGTGAGAGATTGGGATTGAACAAAGGGTTTTGGAGTCCTGAGGAAGATCGCATTCTCATCAATCATATCAACACACATGGTCACAAAAATTGGCATGCCCTACCCAGACAAGCTGGGCTTTTGAGGTGTGGCAAGAGTTGCAGACTCAGGTGGATAAATTATCTTAGGCCAGATATTAAACGAGGCAATTTTACCAGTGAAGAAGAAGACATGATAATCCAGTTGCATGAAAACCTGGGGAATAGATGGTCAGCCATAGCAGCAAAGTTACCAGGTCGAACAGACAACGAAATAAAGAACGTGTGGAACACCCACTTGAAGAAGAGGTTGTCCCAACAAGACAAAGACACGAATCAAAACCAGTCCTTGGTCCGCACACAATTTTCCAAACAACAACAACAACCCGTGAATGCTCTTCCCACAGATCATGTCATCGGAACCACAGAGGAAAAAAAGGCACTGTCATCTCCACAGTCTGCAAGCAGTGACGTGTCAACCCTCACCACTTCTACCACCAGTCACAGCAGAGACCATAACAGTGCTAGTGCTATTGATCATCAACACCGCTTGCCCGTGAAGCCTGAATCGCTCGATGATGATTTCTGGTCTCAAGTTCTCTCACCTGGAAACTCCGGCGACACCGCCAGTTTTCCGGCCACCGGCGCGGGTCACCGGGACTTCCAATGTTCACTCTCTCCGTTGTTGACTTCCAAAGGGGTGCATGCGTCAAGTGCGTACGACAATGTCAACTTCTGGTACGATGTGTACATGGGAGAACAAGAACTACGAGACTTCTGA 816 0.4755 MGRSSCCERLGLNKGFWSPEEDRILINHINTHGHKNWHALPRQAGLLRCGKSCRLRWINYLRPDIKRGNFTSEEEDMIIQLHENLGNRWSAIAAKLPGRTDNEIKNVWNTHLKKRLSQQDKDTNQNQSLVRTQFSKQQQQPVNALPTDHVIGTTEEKKALSSPQSASSDVSTLTTSTTSHSRDHNSASAIDHQHRLPVKPESLDDDFWSQVLSPGNSGDTASFPATGAGHRDFQCSLSPLLTSKGVHASSAYDNVNFWYDVYMGEQELRDF 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01318 271 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 216 - -
Vimu3g01318 271 Pfam Myb-like DNA-binding domain 15 61 IPR001005 -
Vimu3g01318 271 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vimu3g01318 271 CDD SANT 69 112 IPR001005 -
Vimu3g01318 271 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vimu3g01318 271 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu3g01318 271 Gene3D - 69 143 - -
Vimu3g01318 271 SMART sant 66 114 IPR001005 -
Vimu3g01318 271 SMART sant 13 63 IPR001005 -
Vimu3g01318 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vimu3g01318 271 CDD SANT 17 61 IPR001005 -
Vimu3g01318 271 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu3g01318 271 MobiDBLite consensus disorder prediction 157 184 - -
Vimu3g01318 271 FunFam MYB transcription factor 68 142 - -
Vimu3g01318 271 Gene3D - 14 66 - -
Vimu3g01318 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vimu3g01318 271 FunFam MYB-related transcription factor 13 66 - -
Vimu3g01318 271 MobiDBLite consensus disorder prediction 155 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01318 Vimu-Chr3 23589314 23590970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01318 1 271 MYB Transcription Factor Family AT2G31180 45.620 3.20e-72 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu3g01318 Myb_DNA-binding 4.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01318 K09422 - gmx:106794951 310.457