Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01313 ATGGCGAAGGAGCAGATTCAAGTGCTAAATGCCCTGGACACGGCAAAAACTCAATGGTATCATTTCACAGCAATCATCGTTTCAGGAATGGGCTTCTTCACCGATGCCTACGATCTGTTCTGTATATCACTTGTCACAAAGCTCCTTGGTCGCATATACTACCACGTTGATGGGGCTGCACACCCTGGATCATTGCCTGCAAATGTGTCAGCTGCTGTTAACGGTGTAGCTTTTGTTGGAACACTTTCTGGGCAGCTCTTCTTCGGATGGCTCGGTGACAAAATGGGTCGAAAAAAGGTTTATGGCATGACACTCATGCTTATGGTATTAGCCTCTATTGCTTCAGGTCTTTCCTTCGCAAGTGATGCAAAGACTGTGATGACAACTCTTTGCTTCTTCCGCTTCTGGCTTGGTTTTGGCATTGGTGGAGACTACCCTCTTTCAGCCACCATAATGTCTGAGTATTCTAACAAGAAGACTCGTGGTGCCTTCATTGCTGCAGTGTTTGCCATGCAGGGTTTTGGAATATTGGCAGGA 537 0.4655 MAKEQIQVLNALDTAKTQWYHFTAIIVSGMGFFTDAYDLFCISLVTKLLGRIYYHVDGAAHPGSLPANVSAAVNGVAFVGTLSGQLFFGWLGDKMGRKKVYGMTLMLMVLASIASGLSFASDAKTVMTTLCFFRFWLGFGIGGDYPLSATIMSEYSNKKTRGAFIAAVFAMQGFGILAG 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01313 179 ProSiteProfiles Major facilitator superfamily (MFS) profile. 24 179 IPR020846 GO:0022857
Vimu3g01313 179 Gene3D MFS general substrate transporter like domains 20 179 IPR036259 -
Vimu3g01313 179 Pfam Sugar (and other) transporter 26 178 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vimu3g01313 179 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 21 178 - -
Vimu3g01313 179 SUPERFAMILY MFS general substrate transporter 11 179 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01313 Vimu-Chr3 23515088 23517154 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01313 1 179 Inorganic Solute Cotransporters AT3G54700 87.709 2.33e-113 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01313 K08176 - gmx:100786638 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01313 3 23515088 23517154 Vimu3g01313 3 23515088 23517154 ECH
Vimu3g01313 3 23515088 23517154 Vimu6g02719 6 23746992 23749587 PCT