Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01311 ATGGATTTTGATTCATCTATGTTCCAGTACGAAAGCCTTAACAATCCCTTTGTAAATTCTTCTGTGTGTGCAGAAACATTCCATTGGGAGGAGTTTTTTCTCTTCAATGAAGAAAACAGCAGCAATATTCCCTTCAGCTTCAATGAGCAGTCACAAATGAAGGAATCATCCTCATCAGATTCGAACTATTCAGGGAGTTTGGTGAGCAGTGAGTCACAGGTGGAAGTGTCCTCCAATCTAAGTGATGCAAGTGAAGGGAAAGTGGTGAAAGAAACACAAGGTCCAAAGGAGAAGAGACCCTTTAGGGGAGTGAGGAGAAGGCCATGGGGGAAGTTTGCTGCTGAGATAAGAGACTCCACAAGAAATGGGGTTAGAGTGTGGATAGGCACATTTGACACAGCAGAGGCTGCAGCACTGGCCTATGACCAAGCAGCTTTCTCCACAAGAGGTTCCATGGCAGTGCTCAACTTTCCAGAAGAAGTTGTCAGGGAATCACTCAAAGACATGCCCAACAAGCCATGGGAAGATGGTTCCTCACCAGTGTTGGCACTCAAGAAGAAACACACCATGAGAAGAAAGTCCAAGCCCACAAACAAAAAACCCAAAAGGGATCACCACCATGGAAATGTGCTTTCACAGAATGTCTTGGTGCTCGAGGATTTGGGCTCTGATTACTTGGAACAGCTTCTCAGCTTAACTTCTTCTTCTTCTTCTGATCATGTGTTTTTCTAG 732 0.4481 MDFDSSMFQYESLNNPFVNSSVCAETFHWEEFFLFNEENSSNIPFSFNEQSQMKESSSSDSNYSGSLVSSESQVEVSSNLSDASEGKVVKETQGPKEKRPFRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFSTRGSMAVLNFPEEVVRESLKDMPNKPWEDGSSPVLALKKKHTMRRKSKPTNKKPKRDHHHGNVLSQNVLVLEDLGSDYLEQLLSLTSSSSSDHVFF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01311 243 SMART rav1_2 100 164 IPR001471 GO:0003700|GO:0006355
Vimu3g01311 243 MobiDBLite consensus disorder prediction 168 209 - -
Vimu3g01311 243 PANTHER DNA-BINDING DOMAIN 59 234 IPR044808 GO:0003700|GO:0009873
Vimu3g01311 243 SUPERFAMILY DNA-binding domain 101 159 IPR016177 GO:0003677
Vimu3g01311 243 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Vimu3g01311 243 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Vimu3g01311 243 ProSiteProfiles AP2/ERF domain profile. 100 158 IPR001471 GO:0003700|GO:0006355
Vimu3g01311 243 Pfam AP2 domain 101 150 IPR001471 GO:0003700|GO:0006355
Vimu3g01311 243 FunFam Ethylene-responsive transcription factor 2 99 159 - -
Vimu3g01311 243 Gene3D AP2/ERF domain 100 160 IPR036955 GO:0003700|GO:0006355
Vimu3g01311 243 MobiDBLite consensus disorder prediction 185 206 - -
Vimu3g01311 243 MobiDBLite consensus disorder prediction 75 102 - -
Vimu3g01311 243 CDD AP2 101 159 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01311 Vimu-Chr3 23354677 23355963 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01311 89 238 AP2-EREBP Transcription Factor Family AT3G23240 59.603 3.55e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu3g01311 AP2 2.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01311 K14516 - gmx:100780775 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01311 3 23354677 23355963 Vimu3g01311 3 23354677 23355963 ECH
Vimu6g02726 6 23800665 23802129 Vimu3g01311 3 23354677 23355963 PCT