Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01309 ATGGAGGGAGGAAGATCTTCGGTTTCCAATGGAAATGTTGAGGCTCGGTATAGAGGGATTCGGAGAAGGCCATGGGGAAAGTTTGCTGCAGAAATTCGTGACCCTACAAGGAAAGGGACTCGGATATGGCTTGGAACCTTCGAAACTGCAGAACAAGCTGCACGAGCTTATGATGCTGCTGCTTTTCATTTTCGTGGCCACAGAGCCATTCTCAACTTCCCAAATGAGTATCAGTCTTCTAATCCAAACTCTTCTTTGCCTATGCCTTTAACAACACTTCCACCTCCTTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTAT 333 0.4535 MEGGRSSVSNGNVEARYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFETAEQAARAYDAAAFHFRGHRAILNFPNEYQSSNPNSSLPMPLTTLPPPSSSSSSSSSSSSSSY 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01309 111 PIRSF PTI6 5 110 IPR017392 GO:0003700
Vimu3g01309 111 MobiDBLite consensus disorder prediction 95 111 - -
Vimu3g01309 111 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
Vimu3g01309 111 FunFam Ethylene-responsive transcription factor 2 15 75 - -
Vimu3g01309 111 PANTHER DNA-BINDING DOMAIN 13 104 IPR044808 GO:0003700|GO:0009873
Vimu3g01309 111 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
Vimu3g01309 111 Pfam AP2 domain 16 67 IPR001471 GO:0003700|GO:0006355
Vimu3g01309 111 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Vimu3g01309 111 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Vimu3g01309 111 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Vimu3g01309 111 MobiDBLite consensus disorder prediction 74 111 - -
Vimu3g01309 111 Gene3D AP2/ERF domain 15 75 IPR036955 GO:0003700|GO:0006355
Vimu3g01309 111 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01309 Vimu-Chr3 23258264 23258779 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01309 12 89 AP2-EREBP Transcription Factor Family AT3G23230 70.513 1.98e-36 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu3g01309 AP2 3.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01309 - - gmx:100779173 157.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02727 6 23822543 23823200 Vimu3g01309 3 23258264 23258779 PCT