Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01308 ATGCTCAAGACAGAAGAAGAAGTCAAGAACAAGGAGAGGTCGTATAAAGGTGTGAGGAAGAGGCCATGGGGAAAATATGCAGCAGAGATCAGAGACACAACAAGGAATGGAACAAGGGTTTGGCTTGGAACCTTTGACAGTGCAGAAGCTGCTGCTTTGGCTTATGACCAAGCTGCATTCTCCATGAGAGGCCACAATGCTGTGCTCAATTTTCCAGTCAAAAGGGTAAAAGAATCTTTGCAAGAGATCCAATACACTTGCTTCACTGGTTCTTCTCCTGCACTTGCACTCAAGGAGAGGCACTGCATCCAAAGAAAATTGTCATCACAAGAGGATCCAACACCAACTTTGCTCGTGTTAGAGGATCTTGGAGTTGAATATTTAGAGCATCTTTTAAGCATATCAGATCAAACTGAAAGCCCTAGCTGCTTCGACTAA 438 0.4406 MLKTEEEVKNKERSYKGVRKRPWGKYAAEIRDTTRNGTRVWLGTFDSAEAAALAYDQAAFSMRGHNAVLNFPVKRVKESLQEIQYTCFTGSSPALALKERHCIQRKLSSQEDPTPTLLVLEDLGVEYLEHLLSISDQTESPSCFD 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01308 145 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Vimu3g01308 145 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Vimu3g01308 145 FunFam Ethylene-responsive transcription factor 2 13 74 - -
Vimu3g01308 145 Coils Coil 1 21 - -
Vimu3g01308 145 SMART rav1_2 14 78 IPR001471 GO:0003700|GO:0006355
Vimu3g01308 145 Pfam AP2 domain 15 65 IPR001471 GO:0003700|GO:0006355
Vimu3g01308 145 ProSiteProfiles AP2/ERF domain profile. 14 72 IPR001471 GO:0003700|GO:0006355
Vimu3g01308 145 PANTHER DNA-BINDING DOMAIN 5 133 IPR044808 GO:0003700|GO:0009873
Vimu3g01308 145 CDD AP2 15 73 IPR001471 GO:0003700|GO:0006355
Vimu3g01308 145 Gene3D AP2/ERF domain 13 74 IPR036955 GO:0003700|GO:0006355
Vimu3g01308 145 SUPERFAMILY DNA-binding domain 15 73 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01308 Vimu-Chr3 23188352 23188819 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01308 9 138 AP2-EREBP Transcription Factor Family AT3G23240 55.000 3.60e-52 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu3g01308 AP2 1.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01308 K14516 - gmx:100812017 232.646