Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01305 ATGATCATGCAGATGCAGGAGCCTTCAGAAATTTTGTTCCAACCATTGTCATCTAATGATGTTCTTGACCCTCTACAGGATTCTCTTTCCTTCGACATGGTTGACTTCTCTACAGCACCAGCAGAAGGAAACCACAAGGAGGCAAAGAAATTGGTGGTTGAGTCTGAGGTGAAGAATAGGGATAGGTCATACATAGGTGTGAGGAAAAGGCCTTGGGGAAAATTTGCTGCAGAAATCAGAGACACGACAAGGAGTGGCAGAAGGGTTTGGCTTGGAACCTTTGAGAGTGCAGAAGCTGCTGCTTTAGCTTATGACCAAGCTGCATTTTCCATGAGAGGCCATAATGCTGTACTCAATTTTCCTGTCAAAAGAGTTAAAGAGTCTTTGCAAGAGATCCAATATACCTGCTTCAATGGGTCTTCTCCTGCACTTGCACTCAAGGCGAGGCATTGCAAGAAAAAACACTTACCAAAAGCAAAAGAGTGTAAAGGGAAAGAGAAATCAAAGCCATGTGTAGTGGTGTTAGAAGATTTGGGAGTCGACTATCTAGAGCACCTTCTAAGCATATCAGATCAAAGTGCAAGCCCTACCTACTTCAACTAA 603 0.4345 MIMQMQEPSEILFQPLSSNDVLDPLQDSLSFDMVDFSTAPAEGNHKEAKKLVVESEVKNRDRSYIGVRKRPWGKFAAEIRDTTRSGRRVWLGTFESAEAAALAYDQAAFSMRGHNAVLNFPVKRVKESLQEIQYTCFNGSSPALALKARHCKKKHLPKAKECKGKEKSKPCVVVLEDLGVDYLEHLLSISDQSASPTYFN 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01305 200 SUPERFAMILY DNA-binding domain 64 122 IPR016177 GO:0003677
Vimu3g01305 200 Gene3D AP2/ERF domain 63 123 IPR036955 GO:0003700|GO:0006355
Vimu3g01305 200 ProSiteProfiles AP2/ERF domain profile. 63 121 IPR001471 GO:0003700|GO:0006355
Vimu3g01305 200 SMART rav1_2 63 127 IPR001471 GO:0003700|GO:0006355
Vimu3g01305 200 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Vimu3g01305 200 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Vimu3g01305 200 Pfam AP2 domain 64 114 IPR001471 GO:0003700|GO:0006355
Vimu3g01305 200 CDD AP2 64 122 IPR001471 GO:0003700|GO:0006355
Vimu3g01305 200 PANTHER DNA-BINDING DOMAIN 47 191 IPR044808 GO:0003700|GO:0009873
Vimu3g01305 200 FunFam Ethylene-responsive transcription factor 2 62 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01305 Vimu-Chr3 23134658 23135260 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01305 58 195 AP2-EREBP Transcription Factor Family AT3G23240 57.746 6.38e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu3g01305 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01305 K14516 - gmx:100811486 284.648