Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01304 ATGGTTGATTTCTCTACGGCACCAGCACAAGGAAATCACAACCAATTGGTGGTAAAGTGTGAACAAGTGCAGAATAAGGAAAAGTCATACATCGGTGTGAGGAAACGACCTTGGGGGAAATTTGCAGCAGAGATCAGAGACACAACGAGGAATGGCTCAAGGGTTTGGCTTGGAACCTTTGACAGTGCAGAGGCTGCTGCTTTAGCCTATGACCAAGCTGCATTTTCCATGAGAGGCCATAATGCCGTACTCAATTTTCCAGTAAAAACGGTGAAAGAATCTTTGCAAGAGATTCAATATAGCTTCAGCAATGGATCTTCTCCCGCACTTGCACTCAAGGAGAGGAACTTCATCCAGAGAAAACTGTCATCAAGGGCCAGAAAATGTAAAGGTGTTGTGGTGTTAGAGGACTTGGGAGTTGACTATCTAGAACGACTTCTAAGCATGTCTGATCAAAGTGCAAGCCCTAGCAACTTCAATTAA 483 0.4431 MVDFSTAPAQGNHNQLVVKCEQVQNKEKSYIGVRKRPWGKFAAEIRDTTRNGSRVWLGTFDSAEAAALAYDQAAFSMRGHNAVLNFPVKTVKESLQEIQYSFSNGSSPALALKERNFIQRKLSSRARKCKGVVVLEDLGVDYLERLLSMSDQSASPSNFN 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01304 160 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Vimu3g01304 160 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Vimu3g01304 160 SMART rav1_2 29 93 IPR001471 GO:0003700|GO:0006355
Vimu3g01304 160 Pfam AP2 domain 29 80 IPR001471 GO:0003700|GO:0006355
Vimu3g01304 160 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Vimu3g01304 160 FunFam Ethylene-responsive transcription factor 2 28 89 - -
Vimu3g01304 160 SUPERFAMILY DNA-binding domain 29 88 IPR016177 GO:0003677
Vimu3g01304 160 PANTHER DNA-BINDING DOMAIN 19 151 IPR044808 GO:0003700|GO:0009873
Vimu3g01304 160 Gene3D AP2/ERF domain 28 89 IPR036955 GO:0003700|GO:0006355
Vimu3g01304 160 ProSiteProfiles AP2/ERF domain profile. 29 87 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01304 Vimu-Chr3 23123344 23123856 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01304 12 155 AP2-EREBP Transcription Factor Family AT3G23240 53.896 1.97e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu3g01304 AP2 4.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01304 K14516 - gmx:100811486 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01304 3 23123344 23123856 Vimu2g01628 2 11555123 11555874 ECH
Vimu3g01304 3 23123344 23123856 Vimu3g02466 3 39142721 39143350 ECH
Vimu3g01304 3 23123344 23123856 Vimu3g01304 3 23123344 23123856 ECH
Vimu6g02728 6 23831912 23832430 Vimu3g01304 3 23123344 23123856 PCT