Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01301 ATGTTTGAGGAGCCATCAGAAATTTTGTTCGAATCATTGTCGATCAATCATGTTCTGGACACAGTCCATGATTCACTTTCATTCGATATGGTTGAGGAATCTACAACAGAAGAAAACACCAACAAGGCAAAGCAATTGGTGGCGAAGGCTACTGCAGAAGTCAAGAAGAAGGAGAGGTCGTATAAAGGTGTGAGGAAGAGGCCATGGGGAAAATATGCAGCAGAGATCAGAGACACAACAAGGAATGGAACAAGGGTTTGGCTTGGAACCTTTGACAGTGCAGAAGCTGCTGCTTTGGCTTATGACCAAGCTGCATTCTCCATGAGAGGCCACAATGCTGTGCTCAATTTTCCAGTCAAAAGGGTAAAAGAATCTTTGCAAGAGATCCAATACACTTGCTTCACTGGTTCTTCTCCTGCACTTGCACTCAAGGAGAGGCACTGCATCCAAAGAAAATTGTCATCACAAGCTAAAAAGTCTAAAGGGAAAAGCCCATCAGAGGATCCAACACCAACTTTGCTCGTGTTAGAGGATCTTGGAGTTGAATATTTAGAGCATCTTTTAAGCATATCAGATCAAACTGAAAGCCCTAGCTGCTTCGACTAA 606 0.4323 MFEEPSEILFESLSINHVLDTVHDSLSFDMVEESTTEENTNKAKQLVAKATAEVKKKERSYKGVRKRPWGKYAAEIRDTTRNGTRVWLGTFDSAEAAALAYDQAAFSMRGHNAVLNFPVKRVKESLQEIQYTCFTGSSPALALKERHCIQRKLSSQAKKSKGKSPSEDPTPTLLVLEDLGVEYLEHLLSISDQTESPSCFD 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01301 201 SUPERFAMILY DNA-binding domain 61 119 IPR016177 GO:0003677
Vimu3g01301 201 Pfam AP2 domain 61 111 IPR001471 GO:0003700|GO:0006355
Vimu3g01301 201 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
Vimu3g01301 201 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Vimu3g01301 201 Coils Coil 47 67 - -
Vimu3g01301 201 FunFam Ethylene-responsive transcription factor 2 59 120 - -
Vimu3g01301 201 Gene3D AP2/ERF domain 59 120 IPR036955 GO:0003700|GO:0006355
Vimu3g01301 201 CDD AP2 61 119 IPR001471 GO:0003700|GO:0006355
Vimu3g01301 201 ProSiteProfiles AP2/ERF domain profile. 60 118 IPR001471 GO:0003700|GO:0006355
Vimu3g01301 201 PANTHER DNA-BINDING DOMAIN 42 189 IPR044808 GO:0003700|GO:0009873
Vimu3g01301 201 SMART rav1_2 60 124 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01301 Vimu-Chr3 23100452 23101057 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01301 28 194 AP2-EREBP Transcription Factor Family AT3G23240 49.701 3.32e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu3g01301 AP2 2.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01301 K14516 - gmx:100812017 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01301 3 23100452 23101057 Vimu3g01301 3 23100452 23101057 ECH
Vimu2g01628 2 11555123 11555874 Vimu3g01301 3 23100452 23101057 PCT
Vimu3g01301 3 23100452 23101057 Vimu6g02729 6 23839977 23840606 PCT