Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01300 ATGGAAGAGGACTCCTCTAAGGACAAAAACTTGCAATTCAAGAAAGAGCCACACTATAGAGGAGTCCGGCAGCGGCCATGGGGAAAGTTTGCAGCCGAAATTCGAGACCCCGCTCGGCATGGCGGTCGAGTATGGCTGGGAACATTCCTCACGGCGGTGGAAGCTGCTAGGGCTTATGACCGTGCTGCCTTTGAGATGAGAGGTACATCAGCCATTCTCAACTTTCCAAACGAGTATCCTTCATCTTCTTCTTCTATGACTTCCTCTTCATCATTACCATCTTCTTCTTCCTCATCTTCTTCAATGCTTAAAAATGATCATGGTAAACAAGTTATTGAGTTTGAGTGCTTGGATGACAAATTGTTGGAAGACCTTCTTGATTGTGATCACTATTCCTACCACAAAGACTTGCCTAAGAAATGA 423 0.4515 MEEDSSKDKNLQFKKEPHYRGVRQRPWGKFAAEIRDPARHGGRVWLGTFLTAVEAARAYDRAAFEMRGTSAILNFPNEYPSSSSSMTSSSSLPSSSSSSSSMLKNDHGKQVIEFECLDDKLLEDLLDCDHYSYHKDLPKK 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01300 140 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Vimu3g01300 140 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Vimu3g01300 140 MobiDBLite consensus disorder prediction 1 20 - -
Vimu3g01300 140 PANTHER DNA-BINDING DOMAIN 14 126 IPR044808 GO:0003700|GO:0009873
Vimu3g01300 140 Pfam AP2 domain 17 68 IPR001471 GO:0003700|GO:0006355
Vimu3g01300 140 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Vimu3g01300 140 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Vimu3g01300 140 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vimu3g01300 140 PRINTS Ethylene responsive element binding protein signature 58 78 IPR001471 GO:0003700|GO:0006355
Vimu3g01300 140 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Vimu3g01300 140 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Vimu3g01300 140 MobiDBLite consensus disorder prediction 77 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01300 Vimu-Chr3 23095965 23096387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01300 15 130 AP2-EREBP Transcription Factor Family AT3G23230 57.258 1.50e-39 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu3g01300 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01300 - - gmx:100810414 196.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01300 3 23095965 23096387 Vimu3g01300 3 23095965 23096387 ECH
Vimu3g01300 3 23095965 23096387 Vimu6g02730 6 23846400 23846753 PCT