Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu3g01295 | ATGGCACTGAACAAGAATCACTCCTACAACAACAAACTTGGATATGAAGCTCTCCCACCCATTAAAGCCCTGGCTGAAACACTTCAACACCAACCACAACCTTCTTCCTCAGACTATGCTTTTCCAATATTTGTCATTGTTGTGCTCAGTATCTTAGCCACTGTTTTGTTGCTCCTCAGCTACTTCACTTTCTTAACCAAATACTGCTCAAATTGGCGTCAGGTTAACCCAATGAGATGGATTTCCCTCCTGAGAATGCGACACAATGAGGATCCCTTCATAGCATTCTCTCCTGCTATGTGGAACCGAGGGCTTGATGAGTCTGTCATCAGAGAAATCCCTACTTTTCAGTTCATAAAAGGAGAAGAAGGTGAGGATCAAAGTGTGTATGGCTGTGTGGTTTGTTTGGCTGAGTTTAAGGAACATGATGTGCTAAAAGTTCTTCCCAATTGCAACCATGCCTTTCATTTGGACTGCATTGACGTGTGGCTTCAGGCCAATTCCAATTGCCCCCTTTGCAGATCAAGCATTTCAGGCAACACACACTGTCCATTGGATCATATCATAGCTCCAAGTTCTTCTCCTCAGGATTCTCAGTTGCTCTCCAATATGGGTAGTGATGAAGATTTTGTGGTTATTGAAGTGCAACAAGAGAGGAATGACTCAAGGGGAAGCTTGGCACATAGAAATCACTCTACAAGGAAGGTGGAGCACTTGAAACCAAGGAAGTGCCACCATGTTTCCATCATGGGAGATGAGTGTATTGATATCAGAAAGAAAGATGACCAATTTCTCATTCAGCCAATTAGAAGATCTTTCTCAATGGATTCAGCACATGATAGACAAACTTATTTGGATGCTCAAGTCATAATACAACAAAACAGGCATCAGAATGAGGCTAGTGCCAGTGAGTACTATAACAGCAGATGTAGAAGAGCATTCTTCCCATTTTGTTATGGAAAGGGATCCAAAAATGCAGTTCTTCCTCTGGAGAATGATGTTTAG | 1005 | 0.4229 | MALNKNHSYNNKLGYEALPPIKALAETLQHQPQPSSSDYAFPIFVIVVLSILATVLLLLSYFTFLTKYCSNWRQVNPMRWISLLRMRHNEDPFIAFSPAMWNRGLDESVIREIPTFQFIKGEEGEDQSVYGCVVCLAEFKEHDVLKVLPNCNHAFHLDCIDVWLQANSNCPLCRSSISGNTHCPLDHIIAPSSSPQDSQLLSNMGSDEDFVVIEVQQERNDSRGSLAHRNHSTRKVEHLKPRKCHHVSIMGDECIDIRKKDDQFLIQPIRRSFSMDSAHDRQTYLDAQVIIQQNRHQNEASASEYYNSRCRRAFFPFCYGKGSKNAVLPLENDV | 334 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu3g01295 | 334 | PANTHER | RING-H2 FINGER PROTEIN ATL16 | 25 | 331 | IPR044600 | GO:0016567|GO:0016740 | |
Vimu3g01295 | 334 | SUPERFAMILY | RING/U-box | 109 | 179 | - | - | |
Vimu3g01295 | 334 | CDD | RING-H2_EL5-like | 132 | 174 | - | - | |
Vimu3g01295 | 334 | FunFam | E3 ubiquitin-protein ligase ATL6 | 96 | 180 | - | - | |
Vimu3g01295 | 334 | ProSiteProfiles | Zinc finger RING-type profile. | 132 | 174 | IPR001841 | - | |
Vimu3g01295 | 334 | SMART | ring_2 | 132 | 173 | IPR001841 | - | |
Vimu3g01295 | 334 | Pfam | Ring finger domain | 132 | 174 | IPR001841 | - | |
Vimu3g01295 | 334 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 97 | 180 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu3g01295 | Vimu-Chr3 | 23052169 | 23053206 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu3g01295 | 32 | 297 | C3H Transcription Factor Family | AT1G04360 | 42.671 | 1.08e-71 | 225 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu3g01295 | K19041 | - | gmx:100809883 | 605.134 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu3g01295 | 3 | 23052169 | 23053206 | Vimu3g01295 | 3 | 23052169 | 23053206 | ECH | |
Vimu3g01295 | 3 | 23052169 | 23053206 | Vimu6g02731 | 6 | 23850861 | 23851687 | PCT |