Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01295 ATGGCACTGAACAAGAATCACTCCTACAACAACAAACTTGGATATGAAGCTCTCCCACCCATTAAAGCCCTGGCTGAAACACTTCAACACCAACCACAACCTTCTTCCTCAGACTATGCTTTTCCAATATTTGTCATTGTTGTGCTCAGTATCTTAGCCACTGTTTTGTTGCTCCTCAGCTACTTCACTTTCTTAACCAAATACTGCTCAAATTGGCGTCAGGTTAACCCAATGAGATGGATTTCCCTCCTGAGAATGCGACACAATGAGGATCCCTTCATAGCATTCTCTCCTGCTATGTGGAACCGAGGGCTTGATGAGTCTGTCATCAGAGAAATCCCTACTTTTCAGTTCATAAAAGGAGAAGAAGGTGAGGATCAAAGTGTGTATGGCTGTGTGGTTTGTTTGGCTGAGTTTAAGGAACATGATGTGCTAAAAGTTCTTCCCAATTGCAACCATGCCTTTCATTTGGACTGCATTGACGTGTGGCTTCAGGCCAATTCCAATTGCCCCCTTTGCAGATCAAGCATTTCAGGCAACACACACTGTCCATTGGATCATATCATAGCTCCAAGTTCTTCTCCTCAGGATTCTCAGTTGCTCTCCAATATGGGTAGTGATGAAGATTTTGTGGTTATTGAAGTGCAACAAGAGAGGAATGACTCAAGGGGAAGCTTGGCACATAGAAATCACTCTACAAGGAAGGTGGAGCACTTGAAACCAAGGAAGTGCCACCATGTTTCCATCATGGGAGATGAGTGTATTGATATCAGAAAGAAAGATGACCAATTTCTCATTCAGCCAATTAGAAGATCTTTCTCAATGGATTCAGCACATGATAGACAAACTTATTTGGATGCTCAAGTCATAATACAACAAAACAGGCATCAGAATGAGGCTAGTGCCAGTGAGTACTATAACAGCAGATGTAGAAGAGCATTCTTCCCATTTTGTTATGGAAAGGGATCCAAAAATGCAGTTCTTCCTCTGGAGAATGATGTTTAG 1005 0.4229 MALNKNHSYNNKLGYEALPPIKALAETLQHQPQPSSSDYAFPIFVIVVLSILATVLLLLSYFTFLTKYCSNWRQVNPMRWISLLRMRHNEDPFIAFSPAMWNRGLDESVIREIPTFQFIKGEEGEDQSVYGCVVCLAEFKEHDVLKVLPNCNHAFHLDCIDVWLQANSNCPLCRSSISGNTHCPLDHIIAPSSSPQDSQLLSNMGSDEDFVVIEVQQERNDSRGSLAHRNHSTRKVEHLKPRKCHHVSIMGDECIDIRKKDDQFLIQPIRRSFSMDSAHDRQTYLDAQVIIQQNRHQNEASASEYYNSRCRRAFFPFCYGKGSKNAVLPLENDV 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01295 334 PANTHER RING-H2 FINGER PROTEIN ATL16 25 331 IPR044600 GO:0016567|GO:0016740
Vimu3g01295 334 SUPERFAMILY RING/U-box 109 179 - -
Vimu3g01295 334 CDD RING-H2_EL5-like 132 174 - -
Vimu3g01295 334 FunFam E3 ubiquitin-protein ligase ATL6 96 180 - -
Vimu3g01295 334 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Vimu3g01295 334 SMART ring_2 132 173 IPR001841 -
Vimu3g01295 334 Pfam Ring finger domain 132 174 IPR001841 -
Vimu3g01295 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 180 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01295 Vimu-Chr3 23052169 23053206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01295 32 297 C3H Transcription Factor Family AT1G04360 42.671 1.08e-71 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01295 K19041 - gmx:100809883 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01295 3 23052169 23053206 Vimu3g01295 3 23052169 23053206 ECH
Vimu3g01295 3 23052169 23053206 Vimu6g02731 6 23850861 23851687 PCT