Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01291 ATGGACAAATGCTCGGAGGCTGCATCTCCTTCTTGCAGAGGCAGATCCAAGAAACCCAATCTGCAAAGTTCCAAGGTCCAATCGCCAAGCCCCGTTCGCTTCAGCTCCCAGACGCCGGAGAAACCGCCGCAGCGGATCCGTAACCGTGGCGTCGCGCTCTCTATCGCTGACATAAGGAAAGCTGGCAAAGGTTTACAGGAAATGAACCGACGCAGTGAAACGACATCGTCGCAGCAGAGCAAGAGTGTGAGGAGACAGATCTCACTGTGGCCTTCTTCTCCCAGTAAATCCAAGATTACTGATGATGAATCCTCCAAGCTTCCCGAAAAATATGAGATTTTGGATCAGTTCTTCGATCGCTTGGATACTTTGATTTCAATGTTCCGCCTCAAAGGGAAGACTCCATCCTTTACAGAGATCAGTTCTAGAATTGAATCTTTAACTGACAGGAGGTTTACTCATGGGCATCTAGCCCAATTGAAATACATCTTGCCTGAGGCTATTGTTCTTAAGAAGTTTCTTGTCCATGATGAACGGACTTGTTGTATGAAGCCGGATATTCATATTTCTTTAAATCCTGAAGCGGTAGAGTCTGATGCAAAAGGGCACCCTCAACGTAGGAGAGTGTCGTTGAAGAAGTTGTTTCAGTCCCGACTAAGGGATTTTTTGGAATCTCATCCCGAGGTTGATGAAATTCCAGAAGGAACATTGCCTGAGCCATTCAATCGCCCAAAGAAAGATAATATTTTGGACATGTTAGAAACTCGTCTCCCAACGAAATTGTCAACCTGCATGCGCTACAATGACATTGTCAATAATACAGAGTCTGCTGACATAGATGAAAAATTGTTAGTACCTATCAAGACATCAGTTGAGTTGCCTAATGAGCATCTGAAAGCACCTTCTGTCATTGCTCCATCCTTTAGAGCTCGATTTTCTTTGAAATTTGAACTAAATGGAGCAGATGATGTACAACAAAATTCTCCATCAGATTCATTGCAACCTTCCCCATTTGATTTGGCTTCAGAAGCCGCCAGTAGTTTAAATTGTTCAACAAGTTGTGCATCTCTGGAACCATCCAGTGCTCTCCCTTCTTCTCCAAGCATATCCATTGAGTACACAGAAAACAAAGATGGGTCTCTGACGAGCATTGGTGCCGTCTCAACTCCCACGAGAAAAACCTTTGAGTACACCGAAAACAAAGATGGGTCTCTCACCAGTATTGATGCCGTCTCAACTCCAGCTAGAGAAATCAATGAATGCACAGTAAACAAAGATGGTTCTCTTAAAAGCATTGATGCCATGTCAACCCCAGCTAAACTTATTTCTACTCCAATTAGGTTGATGAGTGCCACACCTACATTGTGTTCACCCAAAAGACATTATATGAGCCCAGATGACCAATCTACCAGTTCTTTGAACAAGTTAGCTAGGCGTCCACCTCGCTCAAGGTCATTAAAATTTGACACTCCAGTGAAGAACAAGGAGGCTATGAATGAAGACAATACCGGTGCCTTACCAATAGATGATGACGTTTTTGACATCCTCCCTGGAAAACTTATCCAATCGATTAGGGAAAAGGAAAGAATAGCAATGGAGGAAAGAGACCCAGCTATCACTCAAGCAAAGAAAAGGAAGAAAATGATAGCAAATCTCCCTAAGCTGTTTGATATGATTCGCCTCTTGCTTCGACAGCGTAATTGTATGACGAAAGTGGAGCTTGTAAGCAAGATAATCTCAAGCCACAGCGATATTGTTGATAGAAGTGAAGTTGAAGAGCAGCTAAGTTTGTTGCAACAACTAGCACCGGAATGGATTTCTGAGAAGCAGCTTAACTTTTTTCCTTGTTTTGACTTTATGGCGTATATCTCTGGTAGCATAAACAAACTGTTGAGCCCTGAAACCATTCGAGCATCTCTTGAAGAAGCAACGTAG 1935 0.432 MDKCSEAASPSCRGRSKKPNLQSSKVQSPSPVRFSSQTPEKPPQRIRNRGVALSIADIRKAGKGLQEMNRRSETTSSQQSKSVRRQISLWPSSPSKSKITDDESSKLPEKYEILDQFFDRLDTLISMFRLKGKTPSFTEISSRIESLTDRRFTHGHLAQLKYILPEAIVLKKFLVHDERTCCMKPDIHISLNPEAVESDAKGHPQRRRVSLKKLFQSRLRDFLESHPEVDEIPEGTLPEPFNRPKKDNILDMLETRLPTKLSTCMRYNDIVNNTESADIDEKLLVPIKTSVELPNEHLKAPSVIAPSFRARFSLKFELNGADDVQQNSPSDSLQPSPFDLASEAASSLNCSTSCASLEPSSALPSSPSISIEYTENKDGSLTSIGAVSTPTRKTFEYTENKDGSLTSIDAVSTPAREINECTVNKDGSLKSIDAMSTPAKLISTPIRLMSATPTLCSPKRHYMSPDDQSTSSLNKLARRPPRSRSLKFDTPVKNKEAMNEDNTGALPIDDDVFDILPGKLIQSIREKERIAMEERDPAITQAKKRKKMIANLPKLFDMIRLLLRQRNCMTKVELVSKIISSHSDIVDRSEVEEQLSLLQQLAPEWISEKQLNFFPCFDFMAYISGSINKLLSPETIRASLEEAT 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01291 644 Pfam DNA replication factor Cdt1 C-terminal domain 520 611 IPR032054 -
Vimu3g01291 644 SUPERFAMILY "Winged helix" DNA-binding domain 104 241 IPR036390 -
Vimu3g01291 644 Gene3D - 510 644 IPR038090 -
Vimu3g01291 644 Pfam DNA replication factor CDT1 like 107 207 IPR014939 -
Vimu3g01291 644 CDD Cdt1_c 515 609 IPR032054 -
Vimu3g01291 644 MobiDBLite consensus disorder prediction 68 98 - -
Vimu3g01291 644 MobiDBLite consensus disorder prediction 458 487 - -
Vimu3g01291 644 MobiDBLite consensus disorder prediction 463 478 - -
Vimu3g01291 644 MobiDBLite consensus disorder prediction 15 43 - -
Vimu3g01291 644 SMART CDT1_2 107 239 IPR014939 -
Vimu3g01291 644 CDD Cdt1_m 106 260 IPR014939 -
Vimu3g01291 644 PANTHER DNA REPLICATION FACTOR CDT1 14 643 IPR045173 GO:0003677|GO:0030174|GO:0071163
Vimu3g01291 644 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01291 Vimu-Chr3 22999447 23002474 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01291 436 642 Core DNA Replication Machinery Family AT2G31270 46.154 2.25e-40 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01291 K10727 - gmx:100778818 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01291 3 22999447 23002474 Vimu3g01291 3 22999447 23002474 ECH