Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01288 ATGGGTAGCAACTTGCACCGACTGCTCAGAAGCTTCTGTTTGGGTACTGATTGGAAGTATGCCATCTTTTGGAAGCTCAAACACCGGGCTCGGATGATCCTGACATTGGAGGATGCTTACTATGACAATCCCAATATTTGTGACTCTTCTGGAAATGCGAGCTGTCAGAATACATCGGAGCAGATTGGCAGTGCAGATTTTTCGCATGATCCTCTAGAGTTAGCTGTGGCAAAGATGTCATATCATGTATATTCCTCAGGGGAAGGAATTGTTGGACAGGTAGCTGTTACAGGAAAACATAGGTGGATATTTGAAGATAATCAAGTTACAAGCTCTGGCTCATCTTTAGAGATTGCTGATGGATGGCAATCTCAATTTTCTGCTGGAATTAGGACCATTGTTGTTATAGCCGTAGTCCCCATTGGAGTTGTTCAACTTGGTTCCTTGAATAAAGTTGCTGAAGATATGGGGGTTATAACTTGTATCCGAAGTCTCTTTTTGTCTAATCAAGATTACACAATTCGCCATGATCCTAATCAAGTACAAAATAGTCTGAAGAATTCTTCGTGTGTGTTGGATTCAAAAACTTCAGAAAGTGTGCCTGCTTACTTGCACAATACAGAGAAAACCGTGAAGCATGAATCACTGGATAATTTAATGCCCTTTCAAGGTCCTAGGAACAATTATTCACCTCATGCTGTGAATCAGAAGATGACTGTTGATGTGGCCAAGCATGAGGGGCCAGAATTATACAGTGATGGAAATTTCATTTTGCTTCAGTCAATGTCTAATATGATGAATGTGGAGCAGCAGAAATTTTTAGGGATGAGACCTATAAATGAGAGAAAGTTTGAATTGAACAGTAGTGGCTGTGATGATACAAGTGTGGGATCGGGAAAAAATTTGTCATCTTTTTTACATAATTTGGTTACGGGTAATAGTGGTGTCAATGATTTAGTATGTCCATCCAAAAATGTTGGCGTTGATTCTGTATCCTTCTCCTCAGAATTTCTTGATACAGCTGTCTGTGAGAGTGAAAAGTTTCATTATGTGGATATCAACCAAAATGGAGTGTTGAACTGGACCAGACCTTCAGATGCATACTCTCGACAAGATACTGGGAAGTCAAAGTTTCAGACTGAACCTTGTTCCAAGGATACCGCATACACTTTGAAGTTTCCTGCTGGCTATGAGTTACATGAAGCACTTGGGCCAAGTTTTCTAAGAGGGAGCAAATATTTTGATTGGGCAGTGAAGGCAAATCAAGACGTTAAAGCCGCTGAGATGTCAGATGAGCTAAGCTGTAGCCAATTGACTTCTGAATCTCAGCCAGAGCATCTCTTAGAGGCTATGGTGGCTAACATCTGCCATAGTAATAATAATGTCAATAGCGAGTTGTCATTTTCTACAACAATGCAGGCTGCAATAGCCTCAAGAAGTAATCCCGAGGGTTCCATCCACACTGTCCACACCATTAATTCTGATAGCTGTTCAATAGATCAGCCTCACGTTGGTAGAGAGGAAAAACATTATAATTTGGGTTCATCTGGGATATGTGGTATAATGTCTCCAAAGGGTTTTTCTTCTACATGTCCTAGTTCATGTAGTGAACAATTTGAGAGGTCTTCTGAACCAACTAAGAACAGCAAGAAGAGGGCTAGGCCTGGTGAAAGTTGTAGGCCTAGACCAAGGGACAGACAACTTATCCAAGATCGTATTAAGGAGTTGAGGGAACTGGTACCAAATGGAGCAAAGTGCAGTATTGATTCGCTACTGGAATGCACCATAAAACACATGCTCTTTCTCAAGAATGTAACCAAGCATGCTGACAAGCTAAATAAATTTACGGACACAAAGACTAAGAAAGTTGCAAAAGTTGCTATTTCTAGTGTGGTAGGTTATGGTGTAAATGTCAAAACAGTAAAGAAAGGGGAAAAATTGTTGAGGCCTAGGGGTAAAGCAGTGGAGTCAAAGAACAACACAGTTGAGTTTATTTACAGGGCAAGAGAGGACCTGCTGCAAGATATCAAGAAAGGAAAGAAATTCTCTGCAGAAGGAGAGTACTTGGCTAATGATGAAGAGAAGAAGGAAGAAAGAGGTCCACACGGCACTAAACTAGATAAAGAATCACTTGTCCCGTGGGTTGAAGGAGTGAAGTTGTCCACAATTGAAGGGAATGGCACCCAGGGTCAAACAAGGGCAATAGATGATTTTGAAGTTCAGAACATCAAAGGATCAACAAAGGTTCACCCAACAGTCAATAATATGGAAGAAAATGCAGTCCAAGGGTTCAAGACCTGGCAACAAAAATCCAAGAACCTTTCTTGGAAAAATCTGGCAACAACTCTACTAAGGATAGTTGAAGGGAACAAAAGAAGCATGCTATATGGAGCTAACCCTGTGAATCATTCAAATCTGGTTGGATCTTCATTTAATTTTCCTGGAACTGGATTTAGTAATGATATATGGTTGAAGAAAGTTTTTCGATTTCAACCATTCTTTAGTTCTACTGTTAAATCTAGTTTTGTTGGAAAAAAGGGAGCAACAACTGCCAAAAGTGTTGTTGCTACAAGAACTGATGAAGTCAGAGATGTGAATTTGAAAATTTCACAAAATTGGGCTAAAAAAATTCCAGGAAGAGTGGAAGTCATTGGAGGAGGATCTCTCATATCGACCACCACCCAAGCCCCCAGATTTAAAATTGCAAACAGTAGCAGTGGTATTGGATGGTTTGACAGCAATAACAGGGACTGGGAGTGGGGAAAATTTCATCCAAAAATTCAAGATATGGCTGTCACAAACATATAA 2808 0.4031 MGSNLHRLLRSFCLGTDWKYAIFWKLKHRARMILTLEDAYYDNPNICDSSGNASCQNTSEQIGSADFSHDPLELAVAKMSYHVYSSGEGIVGQVAVTGKHRWIFEDNQVTSSGSSLEIADGWQSQFSAGIRTIVVIAVVPIGVVQLGSLNKVAEDMGVITCIRSLFLSNQDYTIRHDPNQVQNSLKNSSCVLDSKTSESVPAYLHNTEKTVKHESLDNLMPFQGPRNNYSPHAVNQKMTVDVAKHEGPELYSDGNFILLQSMSNMMNVEQQKFLGMRPINERKFELNSSGCDDTSVGSGKNLSSFLHNLVTGNSGVNDLVCPSKNVGVDSVSFSSEFLDTAVCESEKFHYVDINQNGVLNWTRPSDAYSRQDTGKSKFQTEPCSKDTAYTLKFPAGYELHEALGPSFLRGSKYFDWAVKANQDVKAAEMSDELSCSQLTSESQPEHLLEAMVANICHSNNNVNSELSFSTTMQAAIASRSNPEGSIHTVHTINSDSCSIDQPHVGREEKHYNLGSSGICGIMSPKGFSSTCPSSCSEQFERSSEPTKNSKKRARPGESCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLECTIKHMLFLKNVTKHADKLNKFTDTKTKKVAKVAISSVVGYGVNVKTVKKGEKLLRPRGKAVESKNNTVEFIYRAREDLLQDIKKGKKFSAEGEYLANDEEKKEERGPHGTKLDKESLVPWVEGVKLSTIEGNGTQGQTRAIDDFEVQNIKGSTKVHPTVNNMEENAVQGFKTWQQKSKNLSWKNLATTLLRIVEGNKRSMLYGANPVNHSNLVGSSFNFPGTGFSNDIWLKKVFRFQPFFSSTVKSSFVGKKGATTAKSVVATRTDEVRDVNLKISQNWAKKIPGRVEVIGGGSLISTTTQAPRFKIANSSSGIGWFDSNNRDWEWGKFHPKIQDMAVTNI 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01288 935 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 622 IPR043561 GO:0003700|GO:0006355
Vimu3g01288 935 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 553 602 IPR011598 GO:0046983
Vimu3g01288 935 MobiDBLite consensus disorder prediction 538 566 - -
Vimu3g01288 935 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 166 IPR025610 -
Vimu3g01288 935 MobiDBLite consensus disorder prediction 543 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01288 Vimu-Chr3 22947374 22957154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01288 1 622 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 38.785 5.06e-113 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01288 - - gmx:100777740 991.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01288 3 22947374 22957154 Vimu3g01288 3 22947374 22957154 ECH
Vimu6g02734 6 23889276 23896538 Vimu3g01288 3 22947374 22957154 PCT