Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01279 ATGGGAAGAGCTCCTTGTTGTGACAAGGCCAATGTAAAGAAAGGGCCATGGAGTCCTGAGGAAGATGAAAAGCTAAGAGATTTCATAGAGAAACATGGTACAGGTGGAAACTGGATTTCCCTCCCACATAAAGCTGGTTTGAAAAGATGTGGCAAAAGTTGCAGACTCAGATGGCTTAATTATCTGAGGCCAAACCTTAAGCATGGCGAGTTTTCTGAAGATGAAGATAGAATAATCTGCACTCTCTTTGGTAGCATTGGAAGCAGGTGGTCCATCATAGCATCTCAGTTGCCAGGGAGGACTGACAATGATATCAAGAACTACTGGAACACCAAGCTTAAGAAAAAAATGATGGGAATAATGAACCCTTCAGAACTGAAGAAGCCTCACCAGGTTACCCTTTCATCCATGCTTCAAAACTCAACACCCTCTTCATCCTCCTCCTCATCTTCATTATCACTAAAAGGCAATCACAGCTCAAACCATCAACCCCATGTGCCCCATGTGCCTTTCACAAGCCCTGAGACCATTTCATATGAAAGTCTTCTGAGTGGAAACTCTTGTTCCACTTTTGAGAGCCTTTACCAAGTTAATTGTGGGTTTATGCTGGGGGGTGAAACAAGTTGCAGCTCTTCTTCAGATGGAAGCTGCAACAACAATAATCAGATGAATCATGTAAAAGGAGCAGAAGTTGGATATGTTGGTGTTGGAGGTTTTGATGACCAAATTGGTGGTCTCAGTTACCTCTCTAGTGGGGTGGAAGATACCCAAAAGTTGGTGTCCTGCAATGGTGGTATGACTAGTGGGTGGACAGGTGAAGAAAGTAGATTATGGGGAGAAAGTCCATCAGAGTATGGTTTAGAAGAAATTAAACAGCTAATAAGCACAAGTAGTTGCAACAACTTTATGTTTGATGACAGCAAGACAGGGGAAATGGTGATGTACTACTGA 951 0.428 MGRAPCCDKANVKKGPWSPEEDEKLRDFIEKHGTGGNWISLPHKAGLKRCGKSCRLRWLNYLRPNLKHGEFSEDEDRIICTLFGSIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMGIMNPSELKKPHQVTLSSMLQNSTPSSSSSSSSLSLKGNHSSNHQPHVPHVPFTSPETISYESLLSGNSCSTFESLYQVNCGFMLGGETSCSSSSDGSCNNNNQMNHVKGAEVGYVGVGGFDDQIGGLSYLSSGVEDTQKLVSCNGGMTSGWTGEESRLWGESPSEYGLEEIKQLISTSSCNNFMFDDSKTGEMVMYY 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01279 316 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vimu3g01279 316 FunFam Transcription factor RAX3 7 68 - -
Vimu3g01279 316 MobiDBLite consensus disorder prediction 128 171 - -
Vimu3g01279 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Vimu3g01279 316 Gene3D - 69 140 - -
Vimu3g01279 316 SMART sant 13 64 IPR001005 -
Vimu3g01279 316 SMART sant 67 115 IPR001005 -
Vimu3g01279 316 CDD SANT 16 62 IPR001005 -
Vimu3g01279 316 Gene3D - 7 68 - -
Vimu3g01279 316 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vimu3g01279 316 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vimu3g01279 316 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vimu3g01279 316 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vimu3g01279 316 MobiDBLite consensus disorder prediction 128 167 - -
Vimu3g01279 316 PANTHER OS09G0431300 PROTEIN 1 291 - -
Vimu3g01279 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01279 Vimu-Chr3 22754962 22756425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01279 1 119 MYB Transcription Factor Family AT5G57620 84.874 8.16e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu3g01279 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01279 K09422 - gmx:100820139 462.996