Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01270 ATGGGAGGAAAATGTCCGCACCGGAACGTGAAGAAGAGAAGATATTCTCACAAGACAGCACGCCGAACCAAATTTGAGTTGAAAGGGGACGATATGGTTTACGCGCAGCTAAACAAACCCGATGAAGAGATAATCCCTTTACCCGTAGACGAAGATTTGCCTGGGATGGGACAGTTCTATTGCCCTCACTGCGATCGGTACTTTTCCAATATAACTGTGAGGGATGAACACTTTAAGACCAAACGACACAAAAAGCGTGTAAAACAAATGATGGGTCCTGCACCACATACTCAACTTGATGCCGAATTAGCTGCAGGGATGGGTATGCCAGACAATGGACCAAAGCTGATGTCTATGTAA 360 0.4556 MGGKCPHRNVKKRRYSHKTARRTKFELKGDDMVYAQLNKPDEEIIPLPVDEDLPGMGQFYCPHCDRYFSNITVRDEHFKTKRHKKRVKQMMGPAPHTQLDAELAAGMGMPDNGPKLMSM 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01270 119 SMART ZnF_U1_5 56 90 IPR003604 GO:0003676|GO:0008270
Vimu3g01270 119 MobiDBLite consensus disorder prediction 1 20 - -
Vimu3g01270 119 ProSitePatterns Zinc finger C2H2 type domain signature. 61 83 IPR013087 -
Vimu3g01270 119 Gene3D Classic Zinc Finger 46 109 - -
Vimu3g01270 119 FunFam Zinc finger protein 593 46 109 - -
Vimu3g01270 119 ProSiteProfiles Zinc finger matrin-type profile. 59 89 IPR000690 GO:0003676|GO:0005634|GO:0008270
Vimu3g01270 119 PANTHER EXPRESSED PROTEIN 1 119 - -
Vimu3g01270 119 Pfam Zinc-finger double-stranded RNA-binding 58 84 IPR022755 -
Vimu3g01270 119 SUPERFAMILY beta-beta-alpha zinc fingers 45 110 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01270 Vimu-Chr3 22426006 22427479 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01270 3 118 C2H2 Transcription Factor Family AT2G36930 77.586 1.32e-65 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01270 K14821 - gmx:100527632 241.506