Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01263 ATGATGCTTTTGTCTTTCTTTGGAAAGATTCACGATGGCCTCTCAGAAGTGTTAGCACCGATAAGAAGATCACTAACACAGATGATCAACGAAGATCCACTGAATGCATCAGCACAAGTGCCAGATGACGTTTTAGAAGGACACTTTGTGGTTGTTGCTAAAAAGGGTGAAGAAACCAAACGGTTTGTTATGGAGTTGCACTATTTGTGTAACCCTGCATTTTTGAGACTGCTGGAGAGAGCAAGAGAAGAGTTTGGTTTCAGGCAAAAGGGGGTTTTGGAAATTCCCTGCCACCCTCAAGAACTAGAGAAGATTCTAGAAGAAAGAAGAGATCAAAGTGTCGGAGATGGAAGCAAATTAACAGATTCAATTCACATGAATCTAACAAAAGGGTATCCGAATTTTAGCTCCAAGAGATCACATGGGAAACTACAGCAGCAACAGTGGTGGCAGATGTCAGAAGCTAAGGAAAAAAGTTCATTAACAGCTGCATTTTTCTTGAGACTACCAGGGAAAGCTACAGAAGAATCTGACTTTAGACAGAGGAAAGCTCCAGTACTTCCTTACATGCCTGAATGA 579 0.4145 MMLLSFFGKIHDGLSEVLAPIRRSLTQMINEDPLNASAQVPDDVLEGHFVVVAKKGEETKRFVMELHYLCNPAFLRLLERAREEFGFRQKGVLEIPCHPQELEKILEERRDQSVGDGSKLTDSIHMNLTKGYPNFSSKRSHGKLQQQQWWQMSEAKEKSSLTAAFFLRLPGKATEESDFRQRKAPVLPYMPE 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01263 192 Pfam Auxin responsive protein 36 107 IPR003676 GO:0009733
Vimu3g01263 192 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 35 105 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01263 Vimu-Chr3 22265088 22266053 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01263 37 107 Calmodulin-binding Proteins AT5G20810 40.845 1.71e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01263 - K14488 gmx:100809715 178.333