Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01262 ATGCAATGTTTGTCAAGACGCACTAGCAAGTATGGTTCCTCACAAGAAACTTCGTGTGGGTTTCCTCTTGATCTCAATATAAATATCCAATCTCTTCTCACACGCACCCCAACTTCAAAGTTCACACCTTTCAAGTTGAAAATCACGATCAGAAATCATCACCCAGTCTTAGATTTCACGATGATTAGGTCTTTCGTTGGAAAGATTCAAAAGGGTGTCTCGCAGATTGTGCCTGGAAAACCTGCACTGAACTACATCAATGAAAACCAATTGGAAAACACAGGGGCTGTGCCAGAAGATGTTAGCAAAGGGTATTTTGCAGTTATTGCAATCAAAGATGGAGAAATCAAAAGGTTTGTGGTTGAGTTGGATTACTTGACTAATCCTGCATTCTTGGGACTGTTAGATCAAGCTGGAGAAGAGTATGGTTTCAAGCAACAAGGAACTCTTGCAGTCCCTTGTAAGCCTAAGGAGTTACAGAAGATTCTAGATGGTTGGAGAGTGAGACCAGACAGCATCAAAGGTGCAGGAAGGGATTTATATGTACCTAAATTTCTATGA 561 0.41 MQCLSRRTSKYGSSQETSCGFPLDLNINIQSLLTRTPTSKFTPFKLKITIRNHHPVLDFTMIRSFVGKIQKGVSQIVPGKPALNYINENQLENTGAVPEDVSKGYFAVIAIKDGEIKRFVVELDYLTNPAFLGLLDQAGEEYGFKQQGTLAVPCKPKELQKILDGWRVRPDSIKGAGRDLYVPKFL 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01262 186 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 87 162 IPR003676 GO:0009733
Vimu3g01262 186 Pfam Auxin responsive protein 95 163 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01262 Vimu-Chr3 22186842 22188487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01262 98 170 Calmodulin-binding Proteins AT3G43120 36.986 3.12e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01262 - K14488 gmx:106795483 236.884