Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01253 ATGGATCTTGAAGAAGTGGTAAAGGATGAAGACAGTGAGGATGAAATTAATGAGGGCGCTCGAGTGATTGAAGATAGAAGAAGACTTGAGCTTCTTCGTCTTTCTGAGGATGAGAAGCAATTCGTAACTATGTGGAACTCATTTGTTAAGAAACATCGTGTGCTGGTAGATGGCCATATGAATTGGGCATACGAAGCTTTCACAAAATATCATTGTGCTGAGTTTTTCCCTTCCACCCTATTAAACTGGTCATGGAGAGTGTTTATGATAAATCTATATGATTATGGTCTTCTAAAGCCAACGACTATGGTTACATGCTATGCTATGCTCAAACAATATAGGGAACAGAAATAA 354 0.3842 MDLEEVVKDEDSEDEINEGARVIEDRRRLELLRLSEDEKQFVTMWNSFVKKHRVLVDGHMNWAYEAFTKYHCAEFFPSTLLNWSWRVFMINLYDYGLLKPTTMVTCYAMLKQYREQK 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01253 117 PANTHER POLYCOMB GROUP PROTEIN 1 115 - -
Vimu3g01253 117 CDD VEFS-box_EMF2-like 1 113 - -
Vimu3g01253 117 Pfam VEFS-Box of polycomb protein 1 107 IPR019135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01253 Vimu-Chr3 22033311 22034237 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01253 1 112 C2H2 Transcription Factor Family AT5G51230 47.788 1.22e-25 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01253 - - vum:124844574 188.734