Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01243 ATGGCGAACCAACCCGAGTCCTCCGATGCTACCGCGATCCTGGAGCGCAAGAAGGCGCCCAACCGACTCGTCGTTGACGAAGCCGTAAACGATGACAACTCCGTCGTCGCGCTCCACCCTGATACCATGGATAAGCTCCAGCTTTTCCGCGGAGATACAATTCTTCTCAAGGGCAAGAAGAGAAAGGATACTGTCTGTATTGCCCTTGCCGACGATACCTGTGAGGAGCCCAAGATACGGATGAACAAGGTTGTCAGGAGCAACCTTAGGGTTAGACTCGGTGACGTTGTCTCTGTTCACGCATGCCCTGATGTTAAGTACGGAAAGAGAGTGCACATTCTTCCCGTCGATGACACCATTGAGGGCGTTACTGGAAATCTCTTTGATGCTTACTTGAAGCCTTATTTCCTTGAGGCATATAGACCAGTGAGGAAAGGTGACTTGTTTCTTGTGAGAGGGGGGATGAGAAGTGTGGAGTTCAAGGTTATTGAAACCGATCCTGCAGAGTATTGTGTTGTTGCTCCTGACACTGAGATCTTCTGTGAGGGAGAGCCTGTTAAAAGGGAAGATGAGAATCGGTTAGACGAGGTTGGTTATGACGATGTTGGTGGTGTTAGAAAGCAGATGGCACAGATTAGGGAACTGGTGGAACTGCCATTGAGGCATCCACAGTTGTTCAAATCTATTGGTGTTAAGCCACCTAAGGGAATTCTGCTATATGGACCCCCCGGGTCTGGTAAGACTTTGATTGCTCGAGCTGTTGCAAATGAAACTGGAGCCTTCTTTTTCTGCATTAATGGTCCTGAGATCATGTCAAAATTGGCTGGTGAAAGTGAAAGCAATCTGAGGAAGGCATTTGAAGAAGCTGAGAAGAATGCACCCTCAATTATCTTCATTGATGAGATAGATTCGATAGCTCCTAAGAGGGAGAAGACTCACGGGGAAGTTGAGAGGAGAATTGTTTCCCAGCTCTTGACTCTCATGGACGGTCTTAAATCACGTGCTCATGTAATTGTTATTGGAGCAACAAATCGTCCCAATAGCATTGACCCTGCCCTTAGGAGGTTTGGTAGGTTTGATCGGGAGATAGATATTGGCGTTCCTGATGAGGTTGGTCGCCTTGAGGTTGATTTAGAAAGGATTGCTAAGGACACACATGGATATGTTGGTGCTGATCTGGCTGCTTTGTGTACTGAAGCCGCACTTCAATGCATCAGAGAGAAAATGGACGTCATTGACTTGGAGGATGAGTCCATTGATGCCGAGATACTAAACTCAATGGCAGTGTCAAATGAGCATTTCCAGACTGCTCTCGGAACAAGCAATCCTTCTGCTCTCCGAGAAACAGTCGTTGAAGTGCCCAACGTCAGCTGGGAAGATATTGGTGGTCTTGAGAATGTGAAGAGAGAACTTCAAGAGACTGTTCAATATCCAGTGGAACACCCTGAGAAATTTGAGAAGTTTGGAATGTCACCTTCAAAGGGGGTTCTTTTCTATGGGCCTCCCGGTTGTGGTAAAACCCTTTTGGCAAAGGCTATTGCCAATGAATGCCAGGCGAACTTCATCAGTGTCAAAGGTCCCGAACTACTTACCATGTGGTTTGGAGAAAGTGAGGCTAATGTGAGGGAAATTTTTGATAAAGCTCGTGGTTCTGCTCCATGTGTTCTATTCTTTGATGAACTTGACTCTATTGCAACTCAGAGAGGCAGCAGCGTAGGAGATGCTGGTGGTGCTGCTGATAGGGTTTTGAATCAATTGCTTACAGAGATGGATGGTATGTCAGCAAAGAAAACCGTGTTCATCATTGGGGCCACTAATCGACCAGACATTATAGATCCTGCTCTTCTGCGACCGGGCCGTCTGGATCAATTGATTTATATCCCACTCCCAGATGAGGATTCTCGTCATCAGATATTTAAAGCTTGTTTGAGAAAGTCTCCTGTTTCAAAAGATGTTGACCTTCGAGCTCTGGCCAAGTATACTCAGGGCTTCAGTGGTGCAGATATTACTGAAATTTGCCAGCGTGCATGCAAGTATGCTATAAGAGAGAACATTGAGAAGGACATTGAGAGAGAGAGGAGGAAAAGAGATAACCCTGAGGCAATGGAAGAGGATATTGAAGAGGAAGAGGTAGCTGAAATCAAGGCAGCTCATTTTGAGGAGTCAATGAAATATGCACGAAGGAGTGTAAGCGATGCTGACATTCGCAAGTACCAGGCATTTGCTCAGACATTGCAGCAGTCAAGAGGGTTTGGATCCGAGTTCAGGTTTTCAGATGCCAGCGCAGGTGGTGCTGGTGCTGGCGCTGCATCTGACCCTTTTGCAAGTGCTGGTGGAGCTGATGAAGATGATCTTTACAGTTAG 2364 0.4666 MANQPESSDATAILERKKAPNRLVVDEAVNDDNSVVALHPDTMDKLQLFRGDTILLKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHACPDVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDESIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRKRDNPEAMEEDIEEEEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFSDASAGGAGAGAASDPFASAGGADEDDLYS 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01243 787 Pfam AAA+ lid domain 651 691 IPR041569 -
Vimu3g01243 787 Pfam AAA+ lid domain 376 417 IPR041569 -
Vimu3g01243 787 Gene3D - 446 629 IPR027417 -
Vimu3g01243 787 Gene3D - 202 364 IPR027417 -
Vimu3g01243 787 SUPERFAMILY Cdc48 domain 2-like 104 196 IPR029067 -
Vimu3g01243 787 Gene3D - 2 104 - -
Vimu3g01243 787 FunFam Transitional endoplasmic reticulum ATPase 446 629 - -
Vimu3g01243 787 Pfam Cell division protein 48 (CDC48), domain 2 124 187 IPR004201 -
Vimu3g01243 787 Pfam Vps4 C terminal oligomerisation domain 704 743 IPR015415 -
Vimu3g01243 787 Gene3D - 365 445 - -
Vimu3g01243 787 SMART AAA_5 233 369 IPR003593 GO:0016887
Vimu3g01243 787 SMART AAA_5 492 631 IPR003593 GO:0016887
Vimu3g01243 787 MobiDBLite consensus disorder prediction 760 787 - -
Vimu3g01243 787 PANTHER AAA-FAMILY ATPASE 14 748 - -
Vimu3g01243 787 FunFam Cell division control 48 105 201 - -
Vimu3g01243 787 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 454 743 IPR027417 -
Vimu3g01243 787 Pfam Cell division protein 48 (CDC48), N-terminal domain 22 103 IPR003338 -
Vimu3g01243 787 CDD RecA-like_CDC48_r2-like 467 627 - -
Vimu3g01243 787 CDD RecA-like_CDC48_r1-like 201 366 - -
Vimu3g01243 787 Gene3D - 105 201 - -
Vimu3g01243 787 SMART CDC48_N_2 22 105 IPR003338 -
Vimu3g01243 787 ProSitePatterns AAA-protein family signature. 337 355 IPR003960 GO:0005524|GO:0016887
Vimu3g01243 787 Gene3D - 633 742 - -
Vimu3g01243 787 SMART CDC48_2_2 122 188 IPR004201 -
Vimu3g01243 787 FunFam Transitional endoplasmic reticulum ATPase 198 366 - -
Vimu3g01243 787 FunFam Cell division cycle protein 48 homologue 372 445 - -
Vimu3g01243 787 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 444 IPR027417 -
Vimu3g01243 787 Pfam ATPase family associated with various cellular activities (AAA) 237 366 IPR003959 GO:0005524|GO:0016887
Vimu3g01243 787 Pfam ATPase family associated with various cellular activities (AAA) 496 629 IPR003959 GO:0005524|GO:0016887
Vimu3g01243 787 ProSitePatterns AAA-protein family signature. 599 617 IPR003960 GO:0005524|GO:0016887
Vimu3g01243 787 SUPERFAMILY ADC-like 19 102 IPR009010 -
Vimu3g01243 787 FunFam Transitional endoplasmic reticulum ATPase 1 104 - -
Vimu3g01243 787 NCBIfam CDC48 family AAA ATPase 23 746 IPR005938 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01243 Vimu-Chr3 21790097 21795229 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01243 425 756 Calmodulin-binding Proteins AT3G56690 43.373 4.74e-81 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01243 K13525 - gmx:100791603 1462.59