Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01242 ATGGAGTTCCCGACGGGGCTAAGGGTTTTGGTCGTCGACGATGACGCCACCACGCTGAGGATTATAGAGCAAATTGTTTTTGTTTACTTGTGTTTTTATCTTCCAGTTACCACGTGCACTAAGGCTACTGTGGCTTTGAATCTTCTGCAGGAAAGGAAAAGATGGTTTGATGTGGTACTGAGTGATGTTCATATGCCAGACATGGATGGCTATAAGCTCCTTGAACATGTTGGGTTGGAAATGGACCTTCCTATAATTATGATGTTTGGTGATAGTACAAGTGTTGTCATGAAGGGAATTAGACACAGGGCTTGTGATTATTTGATTAAGCCTGTACGTGAGGAAGAACTGAGGAATATATGGCAACATGTTGTTAGGAAAATCTTGAATGAAAATAAAGAACATGATAATTCTGGCAGCATGGAAGACATTTATTGGAATAAACGGGGAAATGATGATATTGAATATACTTCTTTTGTTGCTGATCCAACAGAAGTTGTTAAAGCACCAAAAAAGAGGAGCAGTTTAAAAGAAGAAGATATTGAATTGGAGAGTGATGATCCAACCACATCTAAGAAGCCTCGCGTAATGTGGTCGGTAGAACTGCACCAACAATTTGTCAGTGTTGTGAATCAACTTGGGCTTGATAGTAAGATTCCCCTGCTATATTTTTTTTGCTATTACTTCTATTTTTGCTATTACTATTGGAAAAAATGGATCTATCAGTGGAACTGCTTGTCCCAGAGGGCTTTATGGAATGCCCTGTTGGTACATATAAAAATGTCACTGGATCTGACAAGGCTCTTTGTCATGATTATCCACCTCATGAGCTTCTGTATCGTGCCATTTACATTCCTGTTCGAGGCCGGTGTCCAAGTAGCAAAGCCAATTGTGCAGGTCTTCAATGGCCAAGAGGTTGAAGTTTGGCCTCACGTAACATGGAAACCCAAATGGGGTCTAACTTTTTCTCGGATTAAGAGCAAAGTCAGTGGAAATTGCTCCATTTCTCAAAGGTCTACACTGGCCATCAAGGGTAAAAATATTTTTATTGAAAATCTGTCATTAAATGGGGTTCTCATCATTGATGTTGTGGATGATGCAGAG 1104 0.4013 MEFPTGLRVLVVDDDATTLRIIEQIVFVYLCFYLPVTTCTKATVALNLLQERKRWFDVVLSDVHMPDMDGYKLLEHVGLEMDLPIIMMFGDSTSVVMKGIRHRACDYLIKPVREEELRNIWQHVVRKILNENKEHDNSGSMEDIYWNKRGNDDIEYTSFVADPTEVVKAPKKRSSLKEEDIELESDDPTTSKKPRVMWSVELHQQFVSVVNQLGLDSKIPLLYFFCYYFYFCYYYWKKWIYQWNCLSQRALWNALLVHIKMSLDLTRLFVMIIHLMSFCIVPFTFLFEAGVQVAKPIVQVFNGQEVEVWPHVTWKPKWGLTFSRIKSKVSGNCSISQRSTLAIKGKNIFIENLSLNGVLIIDVVDDAE 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01242 368 CDD REC_typeB_ARR-like 9 125 - -
Vimu3g01242 368 SMART REC_2 7 121 IPR001789 GO:0000160
Vimu3g01242 368 Gene3D - 193 225 - -
Vimu3g01242 368 Gene3D - 290 368 - -
Vimu3g01242 368 Pfam Response regulator receiver domain 9 120 IPR001789 GO:0000160
Vimu3g01242 368 ProSiteProfiles Response regulatory domain profile. 8 125 IPR001789 GO:0000160
Vimu3g01242 368 SUPERFAMILY CheY-like 5 131 IPR011006 -
Vimu3g01242 368 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 218 IPR045279 GO:0009736
Vimu3g01242 368 FunFam UDP-sugar pyrophosphorylase 291 368 - -
Vimu3g01242 368 Gene3D - 7 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01242 Vimu-Chr3 21770066 21772203 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01242 3 220 Response Regulator Gene Family AT4G16110 54.222 8.77e-67 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu3g01242 Response_reg 1.1e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01242 - K14491 gmx:100817125 346.28