Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01239 ATGCCTCCGCTCTGCGCCGCGCGCATTTTCCAGCTCACGCGCGAGCTCGGCCACCGCTCCGACGGTGAGACCATCGAGTGGCTCCTCCGCCACGCAGAGCCTTCCATCATTGCAGCCACCGGCTCCGGTACCATCCCCGCTGCTCCCATCTCCTCAGTCGCACCCTCTGTTCCCTCCTCCGAGTCCTCCGTCTCGGTACCGGTGGTCGGCGGCCAGGGAATGTTCTCCGTGGCGCCGCCAAGCTGCCGCCTCGACCTGTCTCCGCCACCGGGGTTGGATTTCGCGGCAACTAACGGCTATCGACACATGCCGTTCACGGCGCTGCTGTTGCAGCCGTCTGCGGCGGAGGATAACCAGAATGACGAGTCTCTCGGCGAACAATGA 384 0.6536 MPPLCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGSGTIPAAPISSVAPSVPSSESSVSVPVVGGQGMFSVAPPSCRLDLSPPPGLDFAATNGYRHMPFTALLLQPSAAEDNQNDESLGEQ 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01239 127 ProSiteProfiles TCP domain profile. 1 39 IPR017887 -
Vimu3g01239 127 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 71 IPR005333 GO:0003700
Vimu3g01239 127 Pfam TCP family transcription factor 1 87 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01239 Vimu-Chr3 21672106 21673838 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01239 1 112 TCP Transcription Factor Family AT2G37000 58.036 2.06e-32 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vimu3g01239 TCP 8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01239 - - vun:114191143 211.46