Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01234 ATGCAGTCTAGTTCAAATCAGATAGCAATGAAGTGTTTTCCATTCTACTTTGGAGAGAAGAAGGATGGTCCTAAGAGCTTGCAGTCCATATCGGGTCGGTCCAACATTTCTACTACTGTTGAGGCTGAGATGAGGAGATCTGGTTCTGAATTGAACTCAATGGATGCATCAGACACCAGCACAGACTCCCTTCGGAGAAATGCATTTCCCAGCTTGTCTCAAAGACCCAGCAACCTCAGAGTATTTACTGTGCCCGAACTAAAAACATCCACAAAGAGTTTTAGTCGCTCTATGATGCTTGGAGAGGGTGGGTTTGGGTGTGTCTACAAGGGGTTGATCAAGAGTGTTGATGATCCTTCCACAAGAATTGAAGTTGCTGTTAAACAGCTTGGCAGAAGAGGAATTCAGGCAAGGAGTTTCCTTCTAAGTTTTCCTCTTAAGATGAAAGATCTCTTAGAACAATTTTCTGATAGACTTTTCTGTTCAAGCACTCATTCCACAGATTTAGGTGCTTCTGCAGTGCCAGGAGGAATATTAGGGCACAAGGAATGGGTCACAGAAGTGAATGTTCTGGGTATTGTGGAGCATCCAAATCTGGTCAAACTAGTGGGATACTGCGCTGATGATGATGAAAGAGGAATCCAAAGGCTTCTGGTGTATGAATATATGCCCAACAGAAGTGTGGAACACCATTTATCACCACGATCAGAAACTCCTCTCCCATGGAATAGGAGGTTGAAAATAGCCCAAGATGCTGCTCGTGGCTTAACATACCTGCATGAGGAAATGGATTTTCAGATAATTTTCAGAGATTTCAAATCTTCAAATATTCTTTTGGACGAGCAGTGGAAAGCAAAGCTGTCAGACTTTGGGCTAGCAAGATTGGGACCATCTGATGGGTTGACTCATGTCTCAACAGCGGTAGTTGGAACGATGGGTTATGCAGCTCCGGAGTATGTTCAAACTGGACGTCTTACATCAAAGAGTGATGTATGGAGCTACGGTGTCTTCCTTTATGAGCTCATTACTGGCCGGCGGCCGATTGACCGAAATCGCCCCAAAGGTGAGCAGAAGATGTTGGAATGGATAAGGCCATACCTTTCAGATGGAAGGAAATTTCAATTAATATTGGATCCAAGACTTGAGAGGAAACACCTCTTCAAGTCAGCACAAAAACTTGCTGTAATAGCCAACAAATGCTTGGTAAGAAACCCAAAGAATCGCCCAAAGATGAGTGAAGTGTTACAAATGGTGACTCAGGTTGTGGAGTCTTCAGTGAGTACTAATCCACAGCCACCCTTGAAGGGTGTTGTAGCCTCAGAAGAACCTTCTGCTGAAACGGTGAACAAGAAAGTTACCATGGATCAACAACCAGATTGTAATTGGTTAAGGATGCGGAGACCAAAGTTTTTAAGTACATGGTTGTAG 1428 0.4363 MQSSSNQIAMKCFPFYFGEKKDGPKSLQSISGRSNISTTVEAEMRRSGSELNSMDASDTSTDSLRRNAFPSLSQRPSNLRVFTVPELKTSTKSFSRSMMLGEGGFGCVYKGLIKSVDDPSTRIEVAVKQLGRRGIQARSFLLSFPLKMKDLLEQFSDRLFCSSTHSTDLGASAVPGGILGHKEWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLVYEYMPNRSVEHHLSPRSETPLPWNRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDEQWKAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYVQTGRLTSKSDVWSYGVFLYELITGRRPIDRNRPKGEQKMLEWIRPYLSDGRKFQLILDPRLERKHLFKSAQKLAVIANKCLVRNPKNRPKMSEVLQMVTQVVESSVSTNPQPPLKGVVASEEPSAETVNKKVTMDQQPDCNWLRMRRPKFLSTWL 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01234 475 ProSitePatterns Protein kinases ATP-binding region signature. 100 128 IPR017441 GO:0005524
Vimu3g01234 475 Gene3D Phosphorylase Kinase; domain 1 172 223 - -
Vimu3g01234 475 Gene3D Phosphorylase Kinase; domain 1 67 149 - -
Vimu3g01234 475 MobiDBLite consensus disorder prediction 27 62 - -
Vimu3g01234 475 FunFam Serine/threonine-protein kinase PCRK2 223 432 - -
Vimu3g01234 475 Pfam Protein kinase domain 182 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01234 475 Gene3D Transferase(Phosphotransferase) domain 1 224 432 - -
Vimu3g01234 475 CDD STKc_IRAK 100 420 - -
Vimu3g01234 475 ProSiteProfiles Protein kinase domain profile. 94 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g01234 475 SUPERFAMILY Protein kinase-like (PK-like) 70 418 IPR011009 -
Vimu3g01234 475 PANTHER OS01G0588500 PROTEIN-RELATED 57 421 - -
Vimu3g01234 475 MobiDBLite consensus disorder prediction 22 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01234 Vimu-Chr3 21559558 21562684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01234 10 415 Glycoside Hydrolase AT3G07070 39.234 1.63e-84 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu3g01234 Pkinase 2.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01234 - - gmx:100305438 768.074