Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01233 ATGAGGAACCATGCTTCTTCCCTCTCTTTCCTTTTCCTCTTCATCCCTTTCTTCCCGACCATTCAATGCGCCGATAACACTTTCGCCCCATCCTTTTACACCGAAGAGATATACAAGGAGCTTGAAAACCTCGCCATTCTTTTAAACAAGGATATCAAAGCAGGTTTAGGTTTCTGCATCAAGGATGTGCACAAAGATTGGGAGGAAGCATTTGATTTTAAAGGAAGGTTGGATTTCGTGGATTCTTGTGTTAAGAAAAAAGGGGATTTCAGAGATAGAATATGTACTGTGTCTGAAATAAGGTACTACTTCCATGGTTTCCTGGAACAAGGGGCAACATCTAGCAATTATGTAAAACCTAACAGGAACTGCAACTTGACCTCGTGGGTTTCTGGTTGCGAACCTGGATGGAGTTGTAGTGCTGGCAAAAATTTTGACCTCAAAAGAGACATAAAGGACATTCCCTTTAGAACCAGCAACTGTCAGGCTTGTTGTGAGGGGTTTTTCTGCCCTCAAGGATTGACTTGCATGATACCTTGCCCACTAGGTTCTTATTGTCCACTTGCAAAACTGAATAATGCGACTGGAATATGTGACCCATATAGTTACCAAATACCTCAGGGAGAAACAAATCATAGTTGTGGCAGTGCTGACATTTGGACTGGCGTGGTGAACAATAGTGATATCTTTTGTTCTCCAGGATCATACTGCCCCACTACAACACAATGCTCCAGCTTGAGTTCCTGCAATCCAAACACTGCAAACCAAAACATGCATGCTTATGGCGCTTTACTTATTGTTGCATTGAGCACTCTCCTGATCTTCATTTATAATTGTTCTGATCAAGTTCTAGTTACTCGAGAAAGGAGAAAGGCAAAATCTAGAGAAGCTGCTGCTAGACAGGTAAGGGAAACTGTGCAGGCTAGGGAACGGTGGAAAATAGCAAAAGATATTGCTAAGAAAGGTAAAGGGGGAGGATTAGGTGAGCAATTATCTCGAACCTTTTCTCGAAAAAAATCAGCGAAATCAGATACCTTAAAGGTTGGTAACCAAGCTAAACGTGGTATGGGAGATACGTTTTTGCCATCGGTACAAAATTCAAGCTATGAGCAACAGTCTGCAGCTTCAGACGTGCAAAAAAAGGAACCTACCAACCTTACTAAAATGTTGAATTCCCTTGAGGATGACCCACATAGCAATGAAGGATTCAACCTACAAATTGGAGATAAAAACATCAAAAAGCAGATGCCAAAGGGCAAGAATTTACACACACAAAGCCAAATTTTAAGGTATGCTTATGGTCAAATTGAGAAGGAGAAAGCTCAACAAGAGAAAAACAAGAACTTGACTTTCTCCGGAGTTATTTCGATGGCCACAGAAGGTGAGGTTCGAACAAGGCCTGTGATTGAGGTAGCTTTTAAGGACTTAACTCTCACTTTGAAAGGTAAAAGAAAACATCTACTGAGATGTGTGTATGGTAAACTCATGCCGGGTAGAGTTTCTGCTGTGATGGGTCCCTCAGGAGCTGGCAAAACTACATTTCTTTCTGCATTGGCAGGGAAGGCAAGAGGATGCACTATGACGGGATCAATTCTAATTAATGGAAAGGCCGAATCCATTCACTGTTATCAGAAAATTATTGGTTTTGTTCCACAAGATGATATTGTGCATGGGAACTTGACCGTGGAAGAAAATCTTCGTTTCAGTGCAAGATGCAGACTATCCGCGGATATGCCAAAACCAGACAAGGTTCTGATTGTTGAAAGAGTGATTGAGTCCTTAGGACTCCAGGCAGTGAGGGATTCCCTTGTTGGGACAGTAGAAAAACGAGGTATATCTGGGGGACAACGTAAACGTGTAAATGTAGGGATGGAAATGGTTATGGAGCCATCATTATTAATCTTAGACGAACCTACAACTGGCTTAGACAGTGCATCTTCCACTTTATTGCTTAAGGCACTTCGTCGTGAAGCACTAGAAGGGGTAAATATCTGCATGGTACTTCATCAACCAAGCTATACTTTGTTCAGAATGTTTGATGATATAGTGTTTCTAGCCAAAGGAGGTCTTACTGCATATCATGGTCCTGTTAAGAAAGTAGAAGAATACTTTGCTGGCATTGGAATCAATGTACCTGATAGAGTGAATCCTCCCGACCATTTCATTGACATTTTGGAAGGTTTAGTGAAACCAAATGGAGCTGTGACTCATGAGCAGCTTCCTGTCAGATGGATGTTACATAACAGTTACCCAGTACCACCAGACATGCTTCATTTTGCTGATGAAATTGCTGCAGCCTCAACAAATAGCACTGGGGCAAATCCAATAAAGCCCCCAGAGGAAGTTGATGATCAATCCTTTGCTGGAGAGTTTTGGGAGGATATGAAGAGTAATGTTCAGATGCGAAAAGATCATATAGAAGCAACCTTCTTAAAGACTAAGGACTTGTCTAATCGAAGAACTCCTGGTGTAGCTCGACAATACAGATACTACCTTGGACGGGTTTGTAAGCAGGCGCTAAGAGAAGGAAAATCACAAGCAGTTGACTATCTCCTTTTATTGGTTGCTGGCGCTATATTAGGAACTCTTACTAAAGTAAATGACGAAACCTTTGGGTCCCTCGGATATACCTATACCGTTATTGCTGTCTCTTTACTTTGCAAGATTTCAGCTCTGAGATCATTTTCTCTGGATAAATTACAATATTGGAGGGAGAGTGCATCTGGAATTAGCAATCTGGCACATTTTTTGGCCAAAGATTCAATTGATATTTTCAATACAGTCATAAAACCTGTAGTTTATCTGTCCATGTTCTATTTTTTTAGCAATCCAAGGTCAAGTTTCGCAAGTAATTATGTCATTTTGCTTTGCCTTGTGTACTGTGTAACTGGCATGGCATATATAATGGCAATTTATTTTGAGCCTGCTCCAGCACAATTGTGGTCAGTGCTTCTCCCAGTAGTTATGACTCTCATTGCAAACCAGAAGAAAGACACTCTCTTTATGAAGATCCTTGTAAAGTTGTGCTACCCAAATTGGGCTTTAGAGGCATTTATCATTGCAAATGCTGAAAGGTACACTGGAGTTTGGTTGATTACTCGGTGTAGTTCACTAATGAATAATGGCTATAATGTCGGAGACTGGCCTATTTGTATGCTTGCCCTCGTTTTGTATGGTATAATTGCTCGAATTGTGGCCTTCTTTTGTTTAGTGATCACTCAGAAGAAGTGA 3231 0.4107 MRNHASSLSFLFLFIPFFPTIQCADNTFAPSFYTEEIYKELENLAILLNKDIKAGLGFCIKDVHKDWEEAFDFKGRLDFVDSCVKKKGDFRDRICTVSEIRYYFHGFLEQGATSSNYVKPNRNCNLTSWVSGCEPGWSCSAGKNFDLKRDIKDIPFRTSNCQACCEGFFCPQGLTCMIPCPLGSYCPLAKLNNATGICDPYSYQIPQGETNHSCGSADIWTGVVNNSDIFCSPGSYCPTTTQCSSLSSCNPNTANQNMHAYGALLIVALSTLLIFIYNCSDQVLVTRERRKAKSREAAARQVRETVQARERWKIAKDIAKKGKGGGLGEQLSRTFSRKKSAKSDTLKVGNQAKRGMGDTFLPSVQNSSYEQQSAASDVQKKEPTNLTKMLNSLEDDPHSNEGFNLQIGDKNIKKQMPKGKNLHTQSQILRYAYGQIEKEKAQQEKNKNLTFSGVISMATEGEVRTRPVIEVAFKDLTLTLKGKRKHLLRCVYGKLMPGRVSAVMGPSGAGKTTFLSALAGKARGCTMTGSILINGKAESIHCYQKIIGFVPQDDIVHGNLTVEENLRFSARCRLSADMPKPDKVLIVERVIESLGLQAVRDSLVGTVEKRGISGGQRKRVNVGMEMVMEPSLLILDEPTTGLDSASSTLLLKALRREALEGVNICMVLHQPSYTLFRMFDDIVFLAKGGLTAYHGPVKKVEEYFAGIGINVPDRVNPPDHFIDILEGLVKPNGAVTHEQLPVRWMLHNSYPVPPDMLHFADEIAAASTNSTGANPIKPPEEVDDQSFAGEFWEDMKSNVQMRKDHIEATFLKTKDLSNRRTPGVARQYRYYLGRVCKQALREGKSQAVDYLLLLVAGAILGTLTKVNDETFGSLGYTYTVIAVSLLCKISALRSFSLDKLQYWRESASGISNLAHFLAKDSIDIFNTVIKPVVYLSMFYFFSNPRSSFASNYVILLCLVYCVTGMAYIMAIYFEPAPAQLWSVLLPVVMTLIANQKKDTLFMKILVKLCYPNWALEAFIIANAERYTGVWLITRCSSLMNNGYNVGDWPICMLALVLYGIIARIVAFFCLVITQKK 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01233 1076 SMART AAA_5 497 689 IPR003593 GO:0016887
Vimu3g01233 1076 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 471 712 IPR003439 GO:0005524
Vimu3g01233 1076 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 435 1063 - -
Vimu3g01233 1076 Gene3D - 461 707 IPR027417 -
Vimu3g01233 1076 MobiDBLite consensus disorder prediction 323 381 - -
Vimu3g01233 1076 CDD ABCG_EPDR 469 695 - -
Vimu3g01233 1076 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 471 694 IPR027417 -
Vimu3g01233 1076 Pfam ABC-2 type transporter 669 1076 IPR043926 GO:0140359
Vimu3g01233 1076 FunFam ABC transporter G family member 24 465 707 - -
Vimu3g01233 1076 Pfam ABC transporter 493 639 IPR003439 GO:0005524
Vimu3g01233 1076 ProSitePatterns ABC transporters family signature. 612 626 IPR017871 GO:0005524|GO:0016887
Vimu3g01233 1076 MobiDBLite consensus disorder prediction 360 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01233 Vimu-Chr3 21527350 21534131 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01233 498 691 Calmodulin-binding Proteins AT2G36910 28.218 5.36e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01233 - - gmx:100812387 1895.55